Determines order and fibre postions
esorex flames_cal_prep_sff_ofpos [OPTIONS] FILE.sof
Fibre & order position determination procedure: You should feed the recipe with: - even, odd, all fibre images (FIB_FF_EVEN_RED, FIB_FF_ODD_RED, FIB_FF_ALL_RED) - single fibre images, FIB_ORDEF_(REDL|REDU) - master bias frames, MASTER_BIAS_(REDL|REDU) - master slit flatfield frames, MASTER_SFLAT_(REDL|REDU) - order guess tables, FIB_ORD_GUE_(REDL|REDU).
Products are: - Fibre order table (FIB_ORDEF_TABLE_chip) - All fibre info table (FIB_FF_ALL_INFO_TAB) - Odd fibre info table (FIB_FF_ODD_INFO_TAB) - Even fibre info table (FIB_FF_EVEN_INFO_TAB) - Slit flatfield common (SLIT_FF_COM_chip) - Slit flatfield norm (SLIT_FF_NOR_chip) - Slit flatfield data (SLIT_FF_DTC_chip) - Slit flatfield sigma (SLIT_FF_SGC_chip) - Slit flatfield bad pixel (SLIT_FF_BPC_chip) - Slit flatfield boundary (SLIT_FF_BNC_chip) - Fibre flatfield common (FIB_FF_COM_chip) - Fibre flatfield norm (FIB_FF_NOR_chip) - Fibre flatfield norm sigma (FIB_FF_NSG_chip) - Slit flatfield data (SLIT_FF_DTC_chip) - Slit flatfield sigma (SLIT_FF_SGC_chip) - Slit flatfield bad pixel (SLIT_FF_BPC_chip) chip=REDL and REDU
--debug <bool>
Whether or not to save intermediate results to local directory (bool; default: False). The full name of this option for the EsoRex configuration file is uves.debug [default = False].
--plotter <str>
Any plots produced by the recipe are redirected to the command specified by this parameter. The plotting command must contain the substring \'gnuplot\' and must be able to parse gnuplot syntax on its standard input. Valid examples of such a command may include \'gnuplot -persist\' and \'cat > mygnuplot$$.gp\'. A finer control of the plotting options can be obtained by writing an executable script, e.g. my_gnuplot.pl, that executes gnuplot after setting the desired gnuplot options (e.g. set terminal pslatex color). To turn off plotting, set this parameter to \'no\' (str; default: \'no\'). The full name of this option for the EsoRex configuration file is uves.plotter [default = no].
--process_chip <str>
For RED arm data process the redl, redu, or both chip(s) (str; default: \'both\'). The full name of this option for the EsoRex configuration file is uves.process_chip [default = both].
--ext_method <str>
Extraction method (str; default: \'opt\'). The full name of this option for the EsoRex configuration file is flames_cal_prep_sff_ofpos.ext_method [default = opt].
--bias_method <str>
Bias subtraction method, M for master bias frame, N for no bias subtraction, V to subtract a constant bias level defined by the parameter bias_value (str; default: \'M\'). The full name of this option for the EsoRex configuration file is flames_cal_prep_sff_ofpos.bias_method [default = M].
--bias_value <long>
Bias value (only if bias_method = V) (long; default: 200). The full name of this option for the EsoRex configuration file is flames_cal_prep_sff_ofpos.bias_value [default = 200].
--filter_switch <str>
Filter switch (str; default: \'none\'). The full name of this option for the EsoRex configuration file is flames_cal_prep_sff_ofpos.filter_switch [default = none].
--sat_thr <long>
Saturation threshold (long; default: 55000). The full name of this option for the EsoRex configuration file is flames_cal_prep_sff_ofpos.sat_thr [default = 55000].
--fileprep <bool>
Slitff* and Fibreff* file preparation. If fast extraction method is used it should be set to FALSE (bool; default: True). The full name of this option for the EsoRex configuration file is flames_cal_prep_sff_ofpos.fileprep [default = True].
--cubify <bool>
Cubify switch (bool; default: True). The full name of this option for the EsoRex configuration file is flames_cal_prep_sff_ofpos.cubify [default = True].
--save_flat_size <long>
To be sure to use the flat part of a slit flatsone may need to subtract this bit. The default value -1, is used for automatic setting: if WCEN=520 save_flat_size=0, else save_flat_size=2. Values explicitly set by user overwrite this rule. (long; default: -1). The full name of this option for the EsoRex configuration file is flames_cal_prep_sff_ofpos.save_flat_size [default = -1].
--clean_tmp_products <bool>
Input data format (bool; default: False). The full name of this option for the EsoRex configuration file is flames_cal_prep_sff_ofpos.clean_tmp_products [default = False].
Note that it is possible to create a configuration file containing these options, along with suitable default values. Please refer to the details provided by the 'esorex --help' command.
The full documentation for the uves pipeline can be downloaded as a PDF file using the following URL:
ftp://ftp.eso.org/pub/dfs/pipelines/uves/uves-pipeline-manual-5.4.3.pdf
An overview over the existing ESO pipelines can be found on the web page http://www.eso.org/sci/software/pipelines/.
Basic documentation about the EsoRex program can be found at the esorex (1) man page.
It is possible to call the pipelines from python using the python-cpl package. See http://packages.python.org/python-cpl/index.html for further information.
The other recipes of the uves pipeline are uves_cal_response(7), uves_cal_mflat_combine(7), flames_utl_unpack(7), flames_cal_wavecal(7), uves_cal_mkmaster(7), flames_obs_redchain(7), uves_cal_wavecal(7), uves_cal_tflat(7), uves_cal_mflat(7), uves_utl_remove_crh_single(7), uves_obs_scired(7), uves_cal_mbias(7), uves_utl_ima_arith(7), flames_obs_scired(7), uves_cal_orderpos(7), flames_cal_mkmaster(7), flames_cal_predict(7), uves_cal_mdark(7), uves_cal_cd_align(7), uves_obs_redchain(7), flames_cal_orderpos(7), uves_cal_predict(7)
flames_cal_prep_sff_ofpos 5.4.3
Jonas M. Larsen <[email protected]>
Please report any problems to [email protected]. Alternatively, you may send a report to the ESO User Support Department <[email protected]>.
This file is part of the FLAMES/UVES Pipeline Copyright (C) 2004, 2005, 2006, 2007 European Southern Observatory
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02111-1307 USA