srf2fasta (1)

Converts srf files to fasta format

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  4. srf2fasta: Converts srf files to fasta format
  1. Carta.tech
  2. Packages
  3. staden-io-lib-utils
  4. srf2fasta: Converts srf files to fasta format

SYNOPSIS

srf2fasta [-C] srf_archive

DESCRIPTION

srf2fasta extracts sequences from an SRF archive and writes them in fasta format to stdout.

OPTIONS

-C

Masks out sequences tagged as bad quality.

EXAMPLES

To extract only the good quality sequences from runX.srf into runX.fasta.

    srf2fasta -C runX.srf > runX.fasta

AUTHOR

James Bonfield, Wellcome Trust Sanger Institute