cnvkit-import-picard1
Convert picard calculatehsmetrics tabular output to cnvkit .cnn files. the input file is generated by the per_target_coverage option in the calculatehsmetrics script in picard tools. if 'antitarget' is in the input filename, the generated output filename will have the suffix '.antitargetcoverage.cnn', otherwise '.targetcoverage.cnn'.
Overview
usage: cnvkit.py import-picard [-h] [-d DIRECTORY] targets [targets ...]
positional arguments:
- targets
-
Sample coverage .csv files (target and antitarget).
options:
-
-h, --help -
show this help message and exit
-
-d DIRECTORY, --output-dir DIRECTORY -
Output directory name.
Releases
4 releases since Debian 10 (Buster); the text changed 3 times.