cnvkit-import-picard(1) on Linux
The text d5a38c117b92, as Debian 10 (Buster) shipped it.
Convert Picard CalculateHsMetrics tabular output to CNVkit .cnn files. The input file is generated by the PER_TARGET_COVERAGE option in the CalculateHsMetrics script in Picard tools. If 'antitarget' is in the input filename, the generated output filename will have the suffix '.antitargetcoverage.cnn', otherwise '.targetcoverage.cnn'.
Flags it lists
-
--help -
--output-dir -
-d -
-h