cmtk-mat2dof: Matrix to degrees of freedom

OPTIONS

--help: Write list of basic command line options to standard output.
--help-all: Write complete list of basic and advanced command line options to standard output.
--wiki: Write list of command line options to standard output in MediaWiki markup.
--man: Write man page source in 'nroff' markup to standard output.
--version: Write toolkit version to standard output.
--echo: Write the current command line to standard output.
--verbose-level <integer>: Set verbosity level.
--verbose, -v: Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>: Set maximum number of parallel threads (for POSIX threads and OpenMP).

--matrix3x3, -3: Only input upper left 3x3 submatrix.
--transpose, -t: Transpose input matrix.
--pixel-size <string>: For matrices in pixel space (i.e., mapping from grid index to physical coordinate), set image grid pixel size. [Default: NONE]

--center <string>: Set center x,y,z for rotation and scaling. [Default: NONE]
--offset <string>: Set offset dx,dy,dz for translation. [Default: NONE]
--xlate <string>: Translate result relative by given vector. [Default: NONE]
--inverse: Output inverse transformation. Inversion happens after all other modifiers have been applied.

--output <string>, -o <string>: Write output transformation to this file [Default: NONE]
--list <string>: Write output in list format to this archive (directory including 'registration' and 'studylist' files). [Default: NONE]
--append: Append to output file rather than create a new one and overwrite exisiting files.