tree-ppuzzle (1)

Reconstruction of phylogenetic trees by maximum likelihood (parallelized version)

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  4. tree-ppuzzle: Reconstruction of phylogenetic trees by maximum likelihood (parallelized version)
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  4. tree-ppuzzle: Reconstruction of phylogenetic trees by maximum likelihood (parallelized version)

SYNOPSIS

tree-ppuzzle

DESCRIPTION

This manual page documents briefly the tree-ppuzzle command. This manual page was written for the Debian GNU/Linux distribution because the original program does not have a manual page.

TREE-PPUZZLE is the new name for the program previously known as PPUZZLE!

tree-puzzle is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PPUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PPUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This program is the paralelized version of tree-puzzle.

OPTIONS

There are no options. For usage please look at /usr/share/doc/tree-puzzle/tree-puzzle.pdf.

RELATED TO tree-ppuzzle…

phylip(1), treetool(1). tree-puzzle(1).

This manual page was written by Dr. Guenter Bechly <[email protected]>, for the Debian GNU/Linux system (but may be used by others).