parsinsert (1)

Parsimonious insertion of unclassified sequences into phylogenetic tree

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  4. parsinsert: Parsimonious insertion of unclassified sequences into phylogenetic tree
  1. Carta.tech
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  3. parsinsert
  4. parsinsert: Parsimonious insertion of unclassified sequences into phylogenetic tree

DESCRIPTION

parsinsert [options] <insert_sequences>

Perform Insertion of Sequences into Given Tree -m <mask file> - read mask from this file

-s <tree sequences> - read core tree sequences from this file

(default: PI_Tree.fasta)

-t <tree file> - read core tree from this file

(default: PI_Tree.tree) -x <tree taxonomy> - read core tree taxomony from this file

-o <output file> - output taxonomy for each insert sequence to this file

(default: PI_Results.log) -l [-|<log file>] - create log file (default is ParsInsert.log) -n# - number of best matches to display -c# - percent threshold cutoff -p - print node comments in newick file -D# - print branch lengths using # decimal places tree sequence file: PI_Tree.fasta

LICENSE

Copyright (C) 2007-2011 David Knox

This program comes with ABSOLUTELY NO WARRANTY

This is free software, and you are welcome to redistribute under certain conditions - see /usr/share/common-licenses/GPL-3.