Diffusion-weighted mri white matter tractography
MRtrix is a set of tools to perform diffusion-weighted MRI white matter tractography of the brain in the presence of crossing fibres, using Constrained Spherical Deconvolution, and a probabilisitic streamlines algorithm. Magnetic resonance images in DICOM, ANALYZE, or uncompressed NIfTI format are supported.
All MRtrix programs are installed in /usr/lib/mrtrix/bin. You either have to call them with their full path, or extend the search path by this directory. The MRtrix documentation has information on how to do that for a number of popular environments. Please note that it is not necessary to modify LD_LIBRARY_PATH -- despite the advice in the MRtrix manual.
MRtrix has been written by J-Donald Tournier ([email protected])
This manual page was written by Michael Hanke <[email protected]>, for the Debian project (but may be used by others).
The full MRtrix user manual is provided by the mrtrix-doc package.
MRtrix Homepage: http://www.brain.org.au/software/mrtrix