mia-2dfuzzysegment (1)

mia-2dfuzzysegment -i <in-file> [options]

mia-2dfuzzysegment This program runs a combined fuzzy c-means clustering and B-field correction to facilitate a fuzzy segmentation of 2D image. cf D.L. Pham and J.L.Prince, "An adaptive fuzzy C-means algorithm for image segmentation in the presence of intensity inhomogeneities", Pat. Rec. Let., 20:57-68,1999

File-IO

-i --in-file=(input,required)

input image(s) to be segmenetd For supported file types see PLUGINS:2dimage/io

-c --cls-file=(output)

output class probability images (floating point values and multi-image) For supported file types see PLUGINS:2dimage/io

-o --b0-file=(output)

image corrected for intensity non-uniformity For supported file types see PLUGINS:2dimage/io

-g --gain-file=(output)

gain field (floating point valued) For supported file types see PLUGINS:2dimage/io

Help & Info

-V --verbose=warning

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

info \(hy Low level messages

trace \(hy Function call trace

fail \(hy Report test failures

warning \(hy Warnings

error \(hy Report errors

debug \(hy Debug output

message \(hy Normal messages

fatal \(hy Report only fatal errors

--copyright

print copyright information

-h --help

print this help

-? --usage

print a short help

--version

print the version number and exit

Parameters

-n --no-of-classes=3

number of classes

-r --residuum=0.1

relative residuum

--l1=200000

Penalize magnitude of intensity inhomogeinity correction

--l2=2e+06

Smoothness of intensity inhomogeinity correction

Processing

--threads=-1

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

bmp

BMP 2D-image input/output support

Recognized file extensions: .BMP, .bmp

Supported element types:

binary data, unsigned 8 bit, unsigned 16 bit

datapool

Virtual IO to and from the internal data pool

Recognized file extensions: .@

dicom

2D image io for DICOM

Recognized file extensions: .DCM, .dcm

Supported element types:

signed 16 bit, unsigned 16 bit

exr

a 2dimage io plugin for OpenEXR images

Recognized file extensions: .EXR, .exr

Supported element types:

unsigned 32 bit, floating point 32 bit

jpg

a 2dimage io plugin for jpeg gray scale images

Recognized file extensions: .JPEG, .JPG, .jpeg, .jpg

Supported element types:

unsigned 8 bit

png

a 2dimage io plugin for png images

Recognized file extensions: .PNG, .png

Supported element types:

binary data, unsigned 8 bit, unsigned 16 bit

raw

RAW 2D-image output support

Recognized file extensions: .RAW, .raw

Supported element types:

binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

tif

TIFF 2D-image input/output support

Recognized file extensions: .TIF, .TIFF, .tif, .tiff

Supported element types:

binary data, unsigned 8 bit, unsigned 16 bit, unsigned 32 bit

vista

a 2dimage io plugin for vista images

Recognized file extensions: .V, .VISTA, .v, .vista

Supported element types:

binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

Run a 5-class segmentation over input image input.v and store the class probability images in cls.v and the B0-field corrected image in b0.v. mia-2dfuzzysegment -i input.v -c 5 -o b0.v -c cls.v

Gert Wollny

This software is Copyright (c) 1999\(hy2013 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.