Masai indexer synopsis masai_indexer [options] genome file description masai is a fast and accurate read mapper based on approximate seeds and multiple backtracking. see http://www.seqan.de/projects/masai for more information. (c) copyright 2011-2012 by enrico siragusa. -h, --help displays this help message. --version display version information genome index options: -x, --index str select the genome index type. one of esa, sa, qgram, and fm. default: sa. -xp, --index-prefix str specify an genome index prefix name. default: use the genome filename prefix. output options: -t, --tmp-folder str specify a huge temporary folder. default: use the genome folder. version masai_indexer version: 0.7.1 [14053] last update 2013-05-16