maf-convert (1)

Convert maf-format alignments to tabular format

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  4. maf-convert: Convert maf-format alignments to tabular format
  1. Carta.tech
  2. Packages
  3. last-align
  4. maf-convert: Convert maf-format alignments to tabular format

DESCRIPTION

Usage:

  • maf-convert --help maf-convert axt mafFile(s) maf-convert blast mafFile(s) maf-convert html mafFile(s) maf-convert psl mafFile(s) maf-convert sam mafFile(s) maf-convert tab mafFile(s)

Read MAF-format alignments & write them in another format.

OPTIONS

-h, --help

show this help message and exit

-p, --protein

assume protein alignments, for psl match counts

-n, --noheader

omit any header lines from the output

-d, --dictionary

include dictionary of sequence lengths in sam format

-f DICTFILE, --dictfile=\,DICTFILE\/

get sequence dictionary from DICTFILE

-r READGROUP, --readgroup=\,READGROUP\/

read group info for sam format

-l LINESIZE, --linesize=\,LINESIZE\/

line length for blast and html formats (default: 60)