Compute suffix prefix matches from encoded sequence.
gt readjoiner overlap [option ...] [file]
-readset [string]
specify the readset name (default: undefined)
-l [value]
specify the minimum SPM length (default: 0)
-parts [value]
specify the number of parts (default: 0)
-memlimit [string]
specify maximal amount of memory to be used during index construction (in bytes, the keywords MB and GB are allowed) (default: undefined)
-v [yes|no]
be verbose (default: no)
-q [yes|no]
suppress standard output messages (default: no)
-help
display help and exit
-version
display version information and exit
Report bugs to <[email protected]>.