Decode/extract encoded sequences.
gt encseq decode (sequence_file|indexname)
-mirrored [yes|no]
virtually append the reverse complement of each sequence (default: no)
-lossless [yes|no]
allow lossless original sequence retrieval (default: no)
-dir [string]
specify reading direction (fwd, cpl, rev, rcl) (default: fwd)
-singlechars [yes|no]
do not use a GtEncseqReader but access each sequence character separately (default: no)
-seq [value]
extract sequence identified by its number (default: undefined)
-seqrange [start end]
extract multiple consecutive sequences (default: undefined)
-output [...]
specify output format (choose from fasta|concat) (default: fasta)
-range [start end]
concatenated range to extract (implies -output concat) (default: undefined)
-sepchar [string]
specify character to print as SEPARATOR (default: |)
-help
display help for basic options and exit
-help+
display help for all options and exit
-version
display version information and exit
Report bugs to <[email protected]>.