Format sequences from genbank as an xml gbset
gbseqget [\|-\|] [\|-d filename\|] [\|-i filename\|] [\|-m n/p/b\|] [\|-n\|] [\|-o filename\|] [\|-v\|]
gbseqget retrieves biological sequence data from GenBank (according to an input list of GI accession numbers) and prints it out as an XML GBSet document.
A summary of options is included below.
-
Print usage message
-d filename
Input file name for date list (desired accessions, one per line, followed by a blank line and a list of allowed dates, also one per line)
-i filename
Input file name for GI list (default = stdin)
-m n/p/b
Molecule type:
Nucleotide (default)
Protein
Both
-n
Return only new records (for which the given GI refers to an old version)
-o filename
Output file name for the XML GBSet (default = stdout)
-v
Fetch SNP Variations
The GBSet format is deprecated in favor of INSDSet, which you can produce by running insdseqget in place of gbseqget.
The National Center for Biotechnology Information.