gbrowse_syn_load_alignment_database (1)

Script to load the database for gbrowse_syn

  1. Carta.tech
  2. Man Pages
  3. Executable programs or shell commands
  4. gbrowse_syn_load_alignment_database: Script to load the database for gbrowse_syn
  1. Carta.tech
  2. Packages
  3. gbrowse
  4. gbrowse_syn_load_alignment_database: Script to load the database for gbrowse_syn

DESCRIPTION

The expected file format is tab-delimited (shown below): species1 ref1 start1 end1 strand1 cigar_string1 species2 ref2 start2 end2 strand2 cigar_string2 coords1... | coords2... the coordinate format: pos1_species1 pos1_species2 ... posn_species1 posn_species2 | pos1_species2 pos1_species1 ... posn_species2 posn_species1, where pos is the matching sequence coordinate (ungapped) in each species.

AUTHOR

Olivier Sallou (olivier.sallou (at) irisa.fr) - Man page and packaging Lincoln Stein - GBrowse