forge (1)

forge [options] <ann> <dna> [options]

-help -verbose

-pseudocount <float>

[1] (absolute number for all models) -pseudoCoding <float> [0.0] (eg. 0.05) -pseudoIntron <float> [0.0]

-pseudoInter <float>

[0.0]

-min-counts

[0] -lcmask [-fragmentN]

-utr5-length <int>

[50]

-utr5-offset <int>

[10]

-utr3-length <int>

[50]

-utr3-offset <int>

[10]

-explicit <int>

[250]

-min-intron <int>

[30]

-boost <file>

(file of ID <int>)