Sequence and annotation tool
fathom <ann> <dna> <commands>
-help
report useful information -validate [-quiet] -gene-stats [-errors-ok -nucleotide -dinucleotide] -categorize <int> -export <int> [-plus -errors-ok] -extract <feature> -length <int> -offset <int> -exon-intron -split <-number <int> | -training <float> | -GC <float> | -repeat <float>> -ace-format <-gene-method <string> [-dna -extra <string>]> -compare-genes <predictions> [-details] -score-genes <hmm> [-errors-ok] -filter-genes <hmm> -min-score <float> -min-length <int>