fastq_to_fasta (1)

usage: fastq_to_fasta [-h] [-r] [-n] [-v] [-z] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.14 by A. Gordon ([email protected])

[-h]

= This helpful help screen.

[-r]

= Rename sequence identifiers to numbers.

[-n]

= keep sequences with unknown (N) nucleotides.

• Default is to discard such sequences.

[-v]

= Verbose - report number of sequences.

If [-o] is specified,

report will be printed to STDOUT.

• If [-o] is not specified (and output goes to STDOUT), report will be printed to STDERR.

[-z]

= Compress output with GZIP.

[-i INFILE]

= FASTA/Q input file. default is STDIN.

• [-o OUTFILE] = FASTA output file. default is STDOUT.

The quality of this automatically generated manpage might be insufficient. It is suggested to visit

• http://hannonlab.cshl.edu/fastx_toolkit/commandline.html

to get a better layout as well as an overview about connected FASTX tools.