fastaq_trim_ends (1)

Fastaq_trim_ends

  1. Carta.tech
  2. Man Pages
  3. Executable programs or shell commands
  4. fastaq_trim_ends: Fastaq_trim_ends
  1. Carta.tech
  2. Packages
  3. fastaq
  4. fastaq_trim_ends: Fastaq_trim_ends

DESCRIPTION

fastaq_trim_ends [options] <fasta/q in> <bases off start> <bases off end> <fasta/q out>

Trims set number of bases off each sequence in a fasta/q file

positional arguments:

infile

Name of input fasta/q file

start_trim

Number of bases to trim off start

end_trim

Number of bases to trim off end

outfile

Name of output fasta/q file

optional arguments:

-h, --help

show this help message and exit

AUTHOR

fastaq_trim_ends was originally written by Martin Hunt ([email protected])

COPYING

Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.