fastaq_to_orfs_gff (1)

fastaq_to_orfs_gff [options] <fasta/q in> <gff_out>

Writes a GFF file of open reading frames from a fasta/q file

positional arguments:

infile

Name of input fasta/q file

gff_out

Name of output gff file

optional arguments:

-h, --help

show this help message and exit

--min_length INT

Minimum length of ORF, in nucleotides [300]

fastaq_to_orfs_gff was originally written by Martin Hunt ([email protected])

Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.