Fastaq_to_fasta
fastaq_to_fasta <infile> <outfile>
Converts sequence file to FASTA format
infile
Name of input file. Can be any of FASTA, FASTQ, GFF3, EMBL, GBK, Phylip
outfile
Name of output file
-h, --help
show this help message and exit
-l LINE_LENGTH, --line_length LINE_LENGTH
Number of bases on each sequence line of output file [60]
-s, --strip_after_whitespace
Remove everything after first whitesapce in every sequence name
fastaq_to_fasta was originally written by Martin Hunt ([email protected])
Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.