fastaq_expand_nucleotides (1)

Fastaq_expand_nucleotides

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  4. fastaq_expand_nucleotides: Fastaq_expand_nucleotides
  1. Carta.tech
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  4. fastaq_expand_nucleotides: Fastaq_expand_nucleotides

DESCRIPTION

fastaq_expand_nucleotides <infile> <outfile>

Makes all combinations of sequences in input file by using all possibilities of redundant bases. e.g. ART could be AAT or AGT. Assumes input is nucleotides, not amino acids

positional arguments:

infile

Name of input file. Can be any of FASTA, FASTQ, GFF3, EMBL, GBK, Phylip

outfile

Name of output file

optional arguments:

-h, --help

show this help message and exit

AUTHOR

fastaq_expand_nucleotides was originally written by Martin Hunt ([email protected])

COPYING

Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.