csg_map (1)

csg_map [OPTION] [OPTIONPARAMETERS]

Map a reference trajectory to a coarse-grained trajectory. This program can be used to map a whole trajectory or to create an initial configuration for a coarse-grained run only.

Please visit the program site at __http://www.votca.org__.

Allowed options:

-h [ --help ]

produce this help message

--top arg

atomistic topology file

--out arg

output file for coarse-grained trajectory

Mapping options:

--cg arg

coarse graining mapping definitions (xml-file)

--map-ignore arg

list of molecules to ignore separated by ;

--no-map

disable mapping and act on original trajectory

Trajectory options:

--trj arg

atomistic trajectory file

--begin arg (=0)

skip frames before this time

--first-frame arg (=0)

start with this frame

--nframes arg

process the given number of frames

Written and maintained by the VOTCA Development Team <[email protected]>

This Manual Page was converted from t2t format to the this format by txt2tags (http://txt2tags.org) ! The t2t file was extracted from 'csg_map --help' by help2t2t (version 1.2.4 )

Copyright 2009-2011 The VOTCA Development Team (http://www.votca.org)

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

    http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.