Convert ascii matrices into a database suitable for quick reading
copymat [\|-\|] [\|-H\|] [\|-P filename\|] [\|-W N\|] [\|-f X\|] [\|-r F\|]
copymat converts ASCII matrices produced by makemat(1) into a database that can be read into memory quickly.
A summary of options is included below.
-
Print usage message
-H
Print help; overrides all other arguments
-P filename
Database for matrix profiles (default = stdin)
-W N
Word size for RPS database (default = 3)
-f X
Threshold for extending hits for RPS database (default = 11.0)
-r F
Do not create RPS mem map file(s)
The National Center for Biotechnology Information.
impala(1), makemat(1), /usr/share/doc/blast2/impala.html