cmtk-unwarp_image_phantom: Create transformation to unwarp an image based on a phantom description

OPTIONS

--help: Write list of basic command line options to standard output.
--help-all: Write complete list of basic and advanced command line options to standard output.
--wiki: Write list of command line options to standard output in MediaWiki markup.
--man: Write man page source in 'nroff' markup to standard output.
--version: Write toolkit version to standard output.
--echo: Write the current command line to standard output.
--verbose-level <integer>: Set verbosity level.
--verbose, -v: Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>: Set maximum number of parallel threads (for POSIX threads and OpenMP).

--fit-inverse: Fit inverse transformation (mapping actual to expected landmark locations). This is useful for computing a Jacobian volume correction map (using 'reformatx') without having to numerically invert the fitted unwarping transformation.
--fit-forward: Fit forward transformation (mapping expected to actual landmark locations). This is useful for rectifying the image via reslicing (using 'reformatx'). [This is the default]

--degree <integer>: Degree of the fitted polynomial transformation. [Default: 4]

--final-cp-spacing <double>: Final control point grid spacing of the output B-spline transformation. [Default: 0]
--final-cp-dims <string>: Final control point grid dimensions (i.e., number of control points) of the output B-spline transformation. To be provided as 'dimX,dimY,dimZ'. [Default: NONE]
--levels <integer>: Number of levels in the multi-level B-spline approximation procedure. [Default: 1]
--iterations-per-level <integer>: Maximum number of spline coefficient update iterations per level in the multi-level B-spline approximation procedure. [Default: 100]
--rms-threshold <double>: Threshold for relative improvement of the RMS fitting residual. The fitting iteration terminates if (rmsAfterUpdate-rmsBeforeUpdate)/rmsBeforeUpdate < threshold. [Default: 0]
--no-fit-affine: Disable fitting of affine transformation to initialize spline. Instead, fit spline directly. This usually gives worse results and is discouraged.