cmtk-split (1)

split InputImage OutputImagePattern

Split volume image into sub-images, i.e., to separate interleaved images into passes

Global Toolkit Options (these are shared by all CMTK tools)

--help

Write list of basic command line options to standard output.

--help-all

Write complete list of basic and advanced command line options to standard output.

--wiki

Write list of command line options to standard output in MediaWiki markup.

--man

Write man page source in 'nroff' markup to standard output.

--version

Write toolkit version to standard output.

--echo

Write the current command line to standard output.

--verbose-level <integer>

Set verbosity level.

--verbose, -v

Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>

Set maximum number of parallel threads (for POSIX threads and OpenMP).

Orientation Options

--slice-orientation

Define slice axis for splitting. Supported values: "axial", "sagittal", "coronal", "interleave-x", "interleave-y", "interleave-z", where the default is "axial", or use one of the following:

--axial, -a

Interleaved axial images [This is the default]

--sagittal, -s

Interleaved sagittal images

--coronal, -c

Interleaved coronal images

--interleave-x, -x

Interleaved along x axis

--interleave-y, -y

Interleaved along y axis

--interleave-z, -z

Interleaved along z axis [This is the default]

Splitting Options

--factor <integer>, -f <integer>

Interleave factor. This is the number of subimages generated. If this is set to zero, a separate 2D output image is generated for each slice in the input (in the given slice orientation). [Default: 2]

Output Options

--padded, -p

Padded output, i.e., fill in removed slices

--output-xform-path <string>

Optional path template (fprintf-style) for output affine transformation that maps input image coordinates to each output image. [Default: NONE]

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

http://www.fsf.org/licensing/licenses/gpl.html

Report bugs at http://nitrc.org/projects/cmtk/

CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.