cmtk-overlap (1)

overlap [options] image0 image1 [image2 ...]

Compute overlap measures between two or more images

Global Toolkit Options (these are shared by all CMTK tools)

--help

Write list of basic command line options to standard output.

--help-all

Write complete list of basic and advanced command line options to standard output.

--wiki

Write list of command line options to standard output in MediaWiki markup.

--man

Write man page source in 'nroff' markup to standard output.

--version

Write toolkit version to standard output.

--echo

Write the current command line to standard output.

--verbose-level <integer>

Set verbosity level.

--verbose, -v

Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>

Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options

--pad-in <double>, -p <double>

Define padding value for input images [Default: disabled]

--mask <string>, -m <string>

Mask file for optional region-based analysis [Default: NONE]

--num-labels <integer>, -N <integer>

Number of label values [default: autodetect] [Default: 0]

--first-label <integer>, -f <integer>

Index of first label value [default: 0]; labels below this one are ignored [Default: 0]

--by-label

Analysis by label, i.e., separately for each label in given (detected) range

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

http://www.fsf.org/licensing/licenses/gpl.html

Report bugs at http://nitrc.org/projects/cmtk/

CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.