asn2ff (1)

asn2ff [\|-\|] [\|-A X\|] [\|-B X\|] [\|-C\|] [\|-G\|] [\|-L F\|] [\|-M\|] [\|-R\|] [\|-V F\|] [\|-a filename\|] [\|-b\|] [\|-d\|] [\|-e\|] [\|-f b/p/e/s/x/z\|] [\|-g\|] [\|-h F\|] [\|-k F\|] [\|-l filename\|] [\|-m r/d/s/c/k/l/e/p\|] [\|-n F\|] [\|-o filename\|] [\|-p F\|] [\|-q\|] [\|-r filename\|] [\|-s\|] [\|-t\|] [\|-v F\|] [\|-w\|] [\|-y\|] [\|-z\|]

asn2ff converts descriptions of biological sequences from NCBI's ASN.1 format to one of several flat-file formats. This program is built around a deprecated interface; please use asn2gb\FP(1) instead.

A summary of options is included below.

-

Print usage message

-A X

Show region starting at X (default is 0)

-B X

Show region ending at X (default is last position)

-C

Show Bankit comments

-G

Output is one top bioseq only in genome view

-L F

Use old (pre-Genbank 127.0) LOCUS line format

-M

Output is map bioseqs only

-R

For GenBank Release

-V F

Don't use VERSION

-a filename

Filename for ASN.1 input (default is stdin)

-b

Input asnfile in binary mode

-d

Use SeqMgr indexing

-e

Input is a Seq-entry

-f b/p/e/s/x/z

Output Format:

b

GenBank (default)

p

GenPept

e

EMBL

s

PseudoEMBL

x

GenBankSelect

z

EMBLPEPT

-g

Show gi numbers

-h F

Hide sequence

-k F

Don't use complex sets (phy-set,mut-set, pop-set)

-l filename

Log errors to filename

-m r/d/s/c/k/l/e/p

Output mode:

r

release (default)

d

dump

s

Sequin

c

Chromoscope

k

dir-sub-debug

l

dir-sub

e

revise

p

partial report

-n F

Strict gene_binding

-o filename

Output Filename (default is stdout)

-p F

Omit new gene features

-q

Output is one top bioseq only

-r filename

Output error logfile (default is stderr)

-s

Input is a Seq-submit

-t

Show verbose message text

-v F

Suppress error messages

-w

Use HTML output format

-y

Print help format only

-z

New algorithm for orgnames

The National Center for Biotechnology Information.

asn2all(1), asn2asn(1), asn2fsa(1), asn2gb(1), asn2xml(1), asndhuff(1).