Man Pages in ncbi-tools-bin

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  • 35

    Section 1: Executable programs or shell commands

    asn2all.1
    Generate reports from asn.1 biological data
    asn2asn.1
    Convert ncbi data between text and binary asn.1
    asn2ff.1
    Convert asn.1 biological data to a flat format (old version)
    asn2fsa.1
    Convert biological sequence data from asn.1 to fasta
    asn2gb.1
    Convert asn.1 biological data to a genbank-style flat format
    asn2idx.1
    Index asn.1 bioseq-sets for fast access to individual sequences
    asn2xml.1
    Translate biological data from asn.1 to xml
    asndhuff.1
    Decompress compressed asn.1 (casn) files
    asndisc.1
    Check asn.1 biological sequence records for discrepancies
    asnmacro.1
    Process asn.1 biological data per sequin macros
    asntool.1
    Process asn.1 module specifications
    asnval.1
    Validate asn.1 biological sequence records
    checksub.1
    A validator for ncbi asn.1 seq-submit data
    cleanasn.1
    Clean up irregularities in ncbi asn.1 objects
    debruijn.1
    De bruijn sequence generator
    errhdr.1
    Produce a c header file from a set of messages
    fa2htgs.1
    Formatter for high throughput genome sequencing project submissions
    findspl.1
    Find protein splice sites
    gbseqget.1
    Format sequences from genbank as an xml gbset
    gene2xml.1
    Convert ncbi entrez gene asn.1 into xml
    getmesh.1
    Get mesh terms from a medline entry
    getpub.1
    Look up medline entries by uid
    gil2bin.1
    Convert geninfo integrated ids to or from binary
    idfetch.1
    Retrieve biological data from the ncbi id1 server
    indexpub.1
    Index an asn.1 pub-set by medline uid
    insdseqget.1
    Format sequences from genbank as an xml insdset
    makeset.1
    Build a bioseq-set from seq-entries
    nps2gps.1
    Convert nucleotide-protein sets to asn.1 genomic product sets
    sortbyquote.1
    Sort c/c++ code by quoted regions
    spidey.1
    Align mrna sequences to a genome
    subfuse.1
    Merge genbank submissions
    tbl2asn.1
    Prepare a genbank submission using an ascii feature table
    trna2sap.1
    Convert trnascan-se output to an asn.1 seq-annot object
    trna2tbl.1
    Convert trnascan-se output to a sequin feature table
    vecscreen.1
    Find nucleic acid segments of possible vector origin