1 User commands

66,310 pages in section 1.

fi

fi index of FreeBSD shell built-in commands
fi_info Simple utility to query for fabric interfaces
fi_mon_sampler Simple sampler for ofi_hook_monitor provider.
fi_pingpong Quick and simple pingpong test for libfabric
fi_strerror display libfabric error strings
fiarith evaluating arithmetic expressions on images as operands
fiascotopnm Convert compressed FIASCO image to PGM, or PPM
ficalib performing various calibration steps on the input images
ficexam No manpage for this program, utility or function.
fiche Receiver for command line output
ficombine combining (most frequently, averaging) a set of images
ficonv obtaining and evaluating convolution transformations
fid List identifiers that occur in FILENAME
fidelio No manpage for this program, utility or function.
fido2-assert get/verify a FIDO2 assertion
fido2-cred make/verify a FIDO2 credential
fido2-token find and manage a FIDO2 authenticator
FidoAdapter library for LC/MS data management and analysis - tools
fieldcomb combine two or more field frames for video animation
fieldlines simulation of the electric field lines between charged particles.
fields list fields in a table
fierce DNS scanner that helps locate non-contiguous IP space and hostnames against specified domains.
fifolog initialize, write, seek and extract data from a fifolog
fifolog_create initialize, write, seek and extract data from a fifolog
fifolog_reader initialize, write, seek and extract data from a fifolog
fifolog_writer initialize, write, seek and extract data from a fifolog
fifteen_applet Fifteen Applet for the GNOME panel.
fig2dev translates Fig code to various graphics languages
fig2eps Convert xfig files in ps|pdf, processing all the text marked as special with LaTeX.
fig2mpdf creation of multilayer pdf or eps figures from fig files using latex for typesetting
fig2pdf Convert xfig files in ps|pdf, processing all the text marked as special with LaTeX.
fig2ps Convert xfig files in ps|pdf, processing all the text marked as special with LaTeX.
fig2ps2tex generate a TeX file for including a PostScript file
fig2sty LaTeX Layout Generator
fig2sxd utility to convert .fig to .sxd
figlet-toilet display large colourful characters
figtoipe Convert FIG figures into Ipe format
figtree graphical phylogenetic tree viewer
figurine an interactive vector drawing program
fiheader reading and manipulating FITS header keywords
fiign low-level manipulation of masks associated to FITS images
fiinfo providing information or image stamps for images
filament-resgen filament material tools
filamesh filament material tools
filan Multipurpose relay (SOcket CAT)
file determine file type
file-conduit-control-applet GNOME applet to manipulate a Palm PDA
file-info format fasta database for use with ANFO
file-pool-data displays all the contents of a file pool to the standard output
file-roller archive manager for GNOME
file-types-capplet allows you to configure how files of various types should be handled.
file2 kanji code checker.
file2brl Translate an xml or a text file into an embosser-ready braille file
file2c convert file to c-source
file2dgr DGR transmission test program
file2mod tool from openCaster suite
file2sdr SDR data ingestion test program
file2sm shared-memory linked list data ingestion test program
file2sock Sends the contents of a file to a TCP or UNIX domain socket.
file2tcp Interplanetary Overlay Network tools, the NASA implementation of Delay-Tolerant Networking (DTN)
file2udp Interplanetary Overlay Network tools, the NASA implementation of Delay-Tolerant Networking (DTN)
file65 print information for o65 object files
file_menu_applet Gnome applet to browse your filesystem
file_rx_hrpt USRP HRPT Receiver
FileCheck Flexible pattern matching file verifier
filecheck Attempt to reimplement LLVM's FileCheck using Python.
FileCheck-13 Flexible pattern matching file verifier
FileCheck-14 Flexible pattern matching file verifier
FileCheck-15 Flexible pattern matching file verifier
FileCheck-16 Flexible pattern matching file verifier
FileCheck-17 Flexible pattern matching file verifier
FileCheck-18 Flexible pattern matching file verifier
FileCheck-19 Flexible pattern matching file verifier
FileCheck-22 Flexible pattern matching file verifier
FileCheck-3.4 Flexible pattern matching file verifier
FileCheck-3.5 Flexible pattern matching file verifier
FileCheck-3.8 Flexible pattern matching file verifier
FileCheck-3.9 Flexible pattern matching file verifier
FileCheck-4.0 Flexible pattern matching file verifier
FileCheck-6.0 Flexible pattern matching file verifier
FileCheck-7 Flexible pattern matching file verifier
filecompare show differences between files using color graphics
fileconvert-v1-to-v2 Converts eTktab saved files from v1 to v2
FileConverter library for LC/MS data management and analysis - tools
filedumper dump routino database contents
filedumper-slim dump routino database contents
filedumperx dump contents of planetsplitter intermediate data
FileFilter library for LC/MS data management and analysis - tools
FileInfo library for LC/MS data management and analysis - tools
fileinfo image processing library
filelight graphically display disk usage
FileMerger library for LC/MS data management and analysis - tools
filename AME
fileofaxpp POSTSCRIPT pretty printer
filep POSTSCRIPT pretty printer
filepp A generic file preprocessor
fileroot AME
filerunner simple and efficient file manager with FTP
files X file manager with drag and drop capabilities
fileschanged displays altered files
filesearching a fast unix command line interface to WWW services
filesharelist add/remove/list NFS and Samba file shares
fileshareset add/remove/list NFS and Samba file shares
filetest index of FreeBSD shell built-in commands
filetraq keep track of changes in config files.
filetype Infer file type and MIME type of any file/buffer.
filext AME
filezilla FTP client
filius educational network simulator
fill-aa fill in ancestral alleles
fill-an-ac fill or recalculate AN and AC INFO fields.
fill-fs Annotate VCF with flanking sequence
fill-ref-md5 computes MD5 sum of the reference sequence
fill-rsIDs fill missing rsIDs
fillImageDB Generic CTN manual page
fillImageDBScript Generic CTN manual page
fillRSA Generic CTN manual page
fillRSAImpInterp Generic CTN manual page
filofaxp POSTSCRIPT pretty printer
filter filter incoming messages before adding to mailbox
filter-columns filter a tab-delimited table per custom criteria
filter-genbank filter structured files
filter-record filter structured files
filter-stop-words filter out unindexed NCBI Entrez words
filter.pl filters output from murasaki based on various filters
filter1d Time domain filtering of 1-D time series
filter_blat Validate contigs by blat.
filter_contigs Simulate sequencing reads from references.
filter_counts read a ChIP-seq data file and filters out all read counts
filter_hssp filters an HSSP file
filter_seer post filtering of significant kmers
filter_tradis_tags bio-tradis: filters a BAM file and outputs reads
filter_wrapper invoke a KOffice filter as a separate process
filterBam filter BAM file for use with AUGUSTUS tools
filterdiff extract or exclude diffs from a diff file
filterdup Filter duplicate reads depending on sequencing depth
filtergtf filter a gtf annotation file for use with bamfeaturecount
filterm filter terminal input and/or output
filtermail Filter incoming e-mail to accepted, spam or ignored
filterPolishes utilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length. mergePolishes - merge alignments from multiple files sortPolishes - sort alignments by cDNA or genomic sequence index or sequence name convertToExtent - Convert from sim4db format to a single-line tab-delimited format fixPolishesIID - Updates a sim4db file to use the sequence index of a specific fasta file. Can also be used to extract a subset of the alignments from the sim4db file. depthOfPolishes - Outputs a tab-delimited histogram of the depth of polishes at various window sizes. headPolishes - print the first N alignments in a file, similar to head(1) pickBestPolish - report only the 'best' alignment for each cDNA pickUniquePolish - reports alignments where there is a clear single best alignment for each cDNA. plotCoverageVsIdentity - Generates (1) a histogram of the percent identity, (2) a histogram of the percent coverage, and (3) a list of percent identity and coverage (for use in a scatter plot). uniqPolishes - Filters out all alignments for cDNA with multiple alignments (-uniq) or with a single alignment (-dupl). Similar to uniq(1) realignPolishes - recompute the alignments listed in a sim4db file. reportAlignmentDifferences - generates a histogram of the types of errors in a set of alignments Unsupported and Deprecated comparePolishes - Correlate alignments in two files. convertToAtac - Converts from sim4db format to ATAC format. detectChimera - Examines alignments for sequences that might be chimeric. mappedCoverage - Reports the amount of the query sequence (EST, cDNA) that is covered by alignments. parseSNP - Analyzes alignments for SNPs. removeDuplicate - searches the input for duplicate alignments. vennPolishes - Generates a Venn diagram for multiple sim4db files. Used internally by ESTMapper cleanPolishes summarizePolishes
FilterSeq.py Filters sequences in FASTA/FASTQ files
filtlong quality filtering tool for Nanopore and PacBio reads
fim Fbi (linux framebuffer imageviewer) IMproved, an universal image viewer
fimgs poor man's [http://]PostScript/pdf/dvi/cbr/rar/cbz/zip viewer based on fim
finance-quote-wrapper internal interface between gnucash and Finance::Quote
financialFoam part of OpenFOAM (The Open Source CFD Toolbox).
finch A Pimpin' Penguin console frontend to libpurple. Instant Messaging client.
fincore count pages of file contents in core
find search for files in a directory hierarchy
find-all-symbols-11 manual page for find-all-symbols 11
find-all-symbols-13 manual page for find-all-symbols 13
find-all-symbols-14 manual page for find-all-symbols 14
find-all-symbols-15 manual page for find-all-symbols 15
find-all-symbols-16 manual page for find-all-symbols 16
find-all-symbols-17 manual page for find-all-symbols 17
find-all-symbols-18 manual page for find-all-symbols 18
find-all-symbols-19 manual page for find-all-symbols 19
find-all-symbols-22 manual page for find-all-symbols 22
find-all-symbols-3.9 manual page for find-all-symbols 3.9
find-all-symbols-4.0 manual page for find-all-symbols 4.0
find-all-symbols-6.0 manual page for find-all-symbols 6.0
find-all-symbols-7
find-all-symbols-9 manual page for find-all-symbols 9
find-corrupt-whisper-files Find and (optionally) delete corrupt Whisper data files
find-dbgsym-packages gets list of dbgsym packages from executable, library, core dump or process
find-debuginfo finds debuginfo and processes it
find-filter fine-grained file selection based on time attributes
find-in-gene list names of genes overlapping a range
find-libdeps Find soname dependencies for a package
find-libprovides Find soname's which are provided by a package
find-scanner No manpage for this program, utility or function.
find2perl translate find command lines to Perl code
find_libpython locate libpython associated with this Python executable
find_libs find pathnames of libraries
find_mosaic vips utility program
find_numbers find COD numbers for the .cif files in given directories of file lists.
find_optimal_dimensions_for_microstrip_coupler
findaffix Interactive spelling checking
findatp find atoms template files
findbpm average keypresses over the length of a song to find the BPM
findbugs Static Java Code Analyzer
findcon SELinux file context search tool
finddup Find identical files and do something with them
findent Indents, converts and relabels Fortran programs.
finder a set of tools to compile and manage programs written in Eiffel
findfiles Utility to locate files containing specific content
findglare locate glare sources in a RADIANCE scene
findhost.cgi Xymon CGI script to find hosts
findhyph find words hyphenated by TeX in a document
findimagedupes Finds visually similar or duplicate images
findknownsnps main executable for snpomatic
findligand find ligands in a protein structure
findmeastable show the location where a Measures table is found
findmicrophones Gnash Utility For finding microphones on computer.
findmissingcrystal determine which KDE Crystal icons are the same as the KDE Classic hicolor icons
findoidjoins list joins on oids between PostgreSQL tables
findomain manual page for findomain 10.0.1
findproxyfile returns full path to GSI Proxy file
findscu DICOM query (C-FIND) SCU
findsmb list info about machines that respond to SMB name queries on a subnet
findspl find protein splice sites
findstrip find programs that are not stripped
findtr Extracts information about text to be translated
findwaters locate water sites in an electron density map
findwebcams Gnash Utility For finding webcams on computer.
Finger various example GNUstep tools/applications
finger user information lookup program
finger-ldap a wrapper around finger for LDAP
finger@ gets user information from a remote host.
fio flexible I/O tester
fio2gnuplot Render fio's output files with gnuplot
fio_generate_plots Generate plots for Flexible I/O Tester
fiologparser_hist.py Calculate statistics from fio histograms
fiona command line tools for reading/writing geospatial vector data
fiphot performing photometry on normal or subtracted images
firandom generates artificial object lists and simulated images
firebird Firebird server
firecfg Desktop integration utility for Firejail software.
firecrackerconfig setup the /dev/firecracker symbolic link
fireflier fireflier is an interactive firewall administration tool
fireflier-client-gtk this is the qt client for the fireflier project
fireflier-client-kde this is the kde client for the fireflier project
fireflier-client-qt this is the qt client for the fireflier project
fireflier-server fireflier is an interactive firewall administration tool
fireflierd fireflier is an interactive firewall administration tool
fireFoam part of OpenFOAM (The Open Source CFD Toolbox).
firefox a Web browser for X11 derived from the Mozilla browser
firefox-esr a Web browser for X11 derived from the Mozilla browser
firehol an easy to use but powerful iptables stateful firewall
firejail Linux namespaces sandbox program
firejail-ui Firejail sandbox configuration wizard
fireload_cpu No manpage for this program, utility or function.
fireload_file No manpage for this program, utility or function.
firemgr Firejail file manager
firemon Monitoring program for processes started in a Firejail sandbox.
fireqos an easy to use but powerful traffic shaping tool
firestarter program to manage and observe firewalls
fireToFoam part of OpenFOAM (The Open Source CFD Toolbox).
firetools Graphical tools collection for Firejail security sandbox
firewall-applet firewalld applet
firewall-cmd firewalld command line client
firewall-config firewalld GUI configuration tool
firewall-offline-cmd firewalld offline command line client
firewallctl firewalld command line client
firewalld Dynamic Firewall Manager
firmdl3 A firmware downloader for the RCX. Version 3.0.
first Yagi-Uda project quick antenna builder
firstprimes primality certification for the first primes
fis_server Generic CTN manual page
fische standalone sound visualisation
fische2 is a program that provides visualisation to the sound reproduced by a sound device creating waves and particular effects
fisg generates web pages from IRC logs
fish the friendly interactive shell
fish-completions
fish-doc
fish-faq
fish-for-bash-users
fish-interactive
fish-language
fish-prompt-tutorial
fish-terminal-compatibility
fish-tutorial
fish_applet No manpage for this program, utility or function.
fish_indent indenter and prettifier
fish_key_reader explore what characters keyboard keys send
fish_pager fish_pager - internal command used by fish
fishd fishd - universal variable daemon
fisheye an experimental fisheye browser of graphs
fishpoke trigger a poll immediately instead of waiting for the configured polling interval.
fishpolld daemon that allows remote script's execution when triggered from the network
FisicaLab Educational program for Physics
fisql interactive SQL shell
fission Fission is a simple command line tool for managing VMware Fusion VMs.
fistar detecting and characterizing point-like sources
fit-wcs Fit a transformation from x,y and matching RA,DEC coordinates
FitBSplineCurveToPoints part of ANTS registration suite
fitcircle find mean position and pole of best-fit great [or small] circle to points on a sphere.
fitgcp fit mixtures of probability distributions to genome coverage profiles
fitoffset fitoffset
fitrans performing spatial transformations on the input image
fits-column-merge
fits-flip-endian Endian swapping of FITS binary tables.
fits-guess-scale Try to guess the scale of an image based on FITS headers.
fits2bitmap Create a bitmap file from a FITS image.
fits2table convert a FITS file into an casacore table
fitscheck script to detect and fix FITS standards violations
fitscopy copy FITS files with optional filtering
fitscut extract cutouts from FITS image format file
fitsdiff compare two FITS image files and report the differences in header keywords and data.
fitsgetext Pull out individual header or data blocks from multi-HDU FITS files.
fitshdr List headers from a FITS file
fitsheader Print the header(s) of a FITS file.
fitsinfo Print a summary of the HDUs in one or more FITS files(s)
fitsmd5 Compute/update the DATAMD5 keyword/value
fitsort sort FITS header information from a list of files
fitspng FITS to PNG converter.
fitstopnm convert a FITS file into a PNM image
fitsverify test if file conform to the FITS format
FittedBondCurve Example of using QuantLib to fit discount curves
fityk non-linear curve fitting and data analysis
fiu-ctrl a script to remote control programs using libfiu
fiu-ls list processes available for libfiu remote control
fiu-run a script to launch programs using libfiu
fiwalk print the filesystem statistics and exit
fix-nomenclature-errors program to fix nomeclature errors (duh!)
fix-qdf repair PDF files in QDF form after editing
fix-trinity-output Fix output fastq files from Trinity
fix_bs_and_del Fix the Delete and BackSpace keys on a console
fix_include manual page for fix_includes.py 6.0-2
fixACE4consed workaround to allow consed loading the ACE generated by MIRA
fixcr make sure that there is a CR before each LF
fixcrio inserts missing CRs at the ends of lines.
fixcvsdiff fix problematic diff files
fixdlsrps filter to fix DviLaser/PS documents to work with PSUtils
fixel2peaks diffusion-weighted MRI white matter tractography
fixel2sh diffusion-weighted MRI white matter tractography
fixel2tsf diffusion-weighted MRI white matter tractography
fixel2voxel diffusion-weighted MRI white matter tractography
fixelcfestats diffusion-weighted MRI white matter tractography
fixelconnectivity diffusion-weighted MRI white matter tractography
fixelconvert diffusion-weighted MRI white matter tractography
fixelcorrespondence diffusion-weighted MRI white matter tractography
fixelcrop diffusion-weighted MRI white matter tractography
fixelfilter diffusion-weighted MRI white matter tractography
fixelreorient diffusion-weighted MRI white matter tractography
fixfmps filter to fix Framemaker documents so PSUtils work
fiximports fixes import declarations to use the canonical import path
fixincludes Reduce the number of #includes in KDE source files
fixkdeincludes reduce the number of #includes in KDE source files
fixlevel No manpage for this program, utility or function.
fixmacps filter to fix Macintosh documents with saner version of md
fixnt Filter for the Windows NT postscript printer driver.
fixpix AME
fixPolishesIID utilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length. mergePolishes - merge alignments from multiple files sortPolishes - sort alignments by cDNA or genomic sequence index or sequence name convertToExtent - Convert from sim4db format to a single-line tab-delimited format fixPolishesIID - Updates a sim4db file to use the sequence index of a specific fasta file. Can also be used to extract a subset of the alignments from the sim4db file. depthOfPolishes - Outputs a tab-delimited histogram of the depth of polishes at various window sizes. headPolishes - print the first N alignments in a file, similar to head(1) pickBestPolish - report only the 'best' alignment for each cDNA pickUniquePolish - reports alignments where there is a clear single best alignment for each cDNA. plotCoverageVsIdentity - Generates (1) a histogram of the percent identity, (2) a histogram of the percent coverage, and (3) a list of percent identity and coverage (for use in a scatter plot). uniqPolishes - Filters out all alignments for cDNA with multiple alignments (-uniq) or with a single alignment (-dupl). Similar to uniq(1) realignPolishes - recompute the alignments listed in a sim4db file. reportAlignmentDifferences - generates a histogram of the types of errors in a set of alignments Unsupported and Deprecated comparePolishes - Correlate alignments in two files. convertToAtac - Converts from sim4db format to ATAC format. detectChimera - Examines alignments for sequences that might be chimeric. mappedCoverage - Reports the amount of the query sequence (EST, cDNA) that is covered by alignments. parseSNP - Analyzes alignments for SNPs. removeDuplicate - searches the input for duplicate alignments. vennPolishes - Generates a Venn diagram for multiple sim4db files. Used internally by ESTMapper cleanPolishes summarizePolishes
fixproc Fixes a process by performing the specified action.
fixps sanitize PostScript files
fixpsditps filter to fix Transcript psdit documents so PSUtils work
fixpspps filter to fix PSPrint PostScript so PSUtils work
fixscribeps filter to fix Scribe documents so PSUtils work
fixsgml ensures syntactic correctness in a DocBook XML file
fixsmbcop Just Another Gnome Samba Client
fixtd insert tumble and duplex directives in a PostScript file
fixtpps filter to fix Tpscript documents to work with PSUtils
fixuifiles remove undesirable features from Qt/KDE .ui files
fixvers update propdb version codes for libapache-mod-dav
fixvfork.sh No manpage for this program, utility or function.
fixwfwps filter to fix Word for Windows documents so PSUtils work
fixwords List misspelled words on the command line, with suggested corrections
fixwpps filter to fix WP documents so PSUtils work
fixwwps filter to fix Windows Write documents so PSUtils work
fiz analyze damaged zoo archive for data recovery
fizsh Fizsh is a user friendly front end to zsh.

fk

fkiss Freely enjoy childlike KISS, French-KISS!