filter_seer1

Required options:

-k [ --kmers ] arg

file of output from seer

Filtering options:

--chisq arg

minimum unadjusted p-value to output

--pval arg

minimum adjusted p-value to output

--maf arg

minimum maf/max 1-maf to output

--beta arg

minimum |beta| to output

--substr

remove smaller kmers completely represented elsewhere

--pos_beta

output positive effect sizes only

Other options:

-s [ --sort ] arg

field to sort on: chisq, pval, maf or beta

-h [ --help ]

full help message