1 User commands
66,310 pages in section 1.
de
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deactivatea set of wrappers to assist with manage your python virtualenvs All of the commands below are to be used on the Terminal command line. -
deadreaderreading corrupted CD/DVD media -
deadwoodA fully recursive caching DNS resolver -
deallocvtdeallocate unused virtual consoles -
deb-check for missing Breaks/Replaces in Debian packagescheck- file- conflicts -
deb-GNOME viewer for .deb package files and contentsgview -
deb-interact with the Debian Janitor servicejanitor -
deb-Debianize a sourcecode packagemake -
deb-simple script to change the version of a .deb filereversion -
deb-scrub a Debian package of no longer necessary configurationscrub- obsolete -
deb-shows the reason a package was removed from the archivewhy- removed -
deb2apptainerBuild a Singularity/Apptainer image with given Debian packages -
deb2dockerBuild a Docker image with given Debian packages -
deb2singularityBuild a Singularity/Apptainer image with given Debian packages -
deb2solvconvert one or more Debian package files into a solv file -
deb3convert debian source package to new 3.0 (quilt) format -
debarchiverTool to sort debian packages into a package archive. -
debaucha shell script for easy acessing libdebauch.so -
debbisectbisect snapshot.debian.org -
debbugsa fast unix command line interface to WWW services -
debcview contents of a generated Debian package -
debcargoPackage Rust crates for Debian. -
debcargo-Print the transitive dependencies of a package in topological orderbuild- order -
debcargo-Print the dependencies of a package in d/control formatdeb- dependencies -
debcargo-Print the Debian package name for a cratedeb- src- name -
debcargo-Extract only a crate, without any other transformationsextract -
debcargo-Package a Rust crate for Debianpackage -
debcargo-Update the user's default crates.io index, outside of a workspaceupdate -
debchangeTool for maintenance of the debian/changelog file in a source package -
debcheck-debcheck-node-reponode- repo -
debcheckoutcheckout the development repository of a Debian package -
debciDebian Continuous Integration debci COMMAND [OPTIONS] [ARGUMENTS] -
debcleanclean up a sourcecode tree -
debcommitcommit changes to a package -
debconfrun a debconf-using program -
debconf-install packages using debconf to display a progress barapt- progress -
debconf-communicate with debconfcommunicate -
debconf-copy a debconf databasecopydb -
debconf-helper when working with debconf's escape capabilityescape -
debconf-output contents of debconf databaseget- selections -
debconf-extract a language from a templates filegetlang -
debconf-extract translations of debconf templates into PO filesgettextize -
debconf-Provide KDE Debconf frontendkde- helper -
debconf-load template file into debconf databaseloadtemplate -
debconf-merge together multiple debconf template filesmergetemplate -
debconf-insert new values into the debconf databaseset- selections -
debconf-query the debconf databaseshow -
debconf-update PO files about debconf templatesupdatepo -
debconf2po-update PO files about debconf templatesupdate -
debconf2potextract gettext strings from master files -
debcontentsa fast unix command line interface to WWW services -
debcraftEasy, fast and secure way to build Debian packages -
debdateConvert Gregorian dates to Debian Regnal dates -
debdeltacompute changes between Debian packages -
debdelta-Downloads all deltas that may be used to 'apt-get upgrade', and apply them.upgrade -
debdeltascompute deltas between Debian packages -
debdiffcompare file lists in two Debian packages -
debdiff-apply a debdiff to a Debian source packageapply -
debdryMerge manually and automatically generated debian/ packaging. -
debefivm-Create an EFI-bootable VM image for various Debian releases and architecturescreate -
debefivm-Run a virtual machine from an EFI-bootable raw disk imagerun -
debefivm-Create Unified Kernel Images for UEFI systems in a similar way to systemd's ukifyukify -
debftbfslist packages that have FTBFS bugs filed -
debgetFetch one or more .deb files for a package in APT's database -
debgptGeneral Purpose Terminal LLM Tool with Some Debian-Specific Design -
debgtda tool to help organise and prioritise your Debian bugs -
debhelper -
debiinstall current version of generated Debian package -
debian-Rebuild a Debian package from its source code.builder -
debian-provides information about Debian's distributionsdistro- info -
debian-copy user's PKI files from the Debian Edu main serveredu- copy- pki -
debian-find LDAP server and LDAP baseedu- ldapserver -
debian-helper to build Matlab extensions on Debianmatlab- mexhelper -
debian-measure response times from mirrorsmirrors -
debian-The Debian PLT Setup Utilityplt -
debian-post-installation user's guidereference -
debian-report differences in packages referenced by two sources.list files.report -
debian-debian-repro-statusrepro- status -
debian-create and manage changes against Debian packaging branchessvp -
debian-Run regression teststest -
debiandoc-ease translating DebianDoc SGML documentsgettextize -
debiandoc-overview of the DebianDoc-SGML formatting toolssgml -
debiandoc-Script to "normalize" debiandoc-sgml filestidy -
debiandoc2dbkoverview of the DebianDoc-SGML formatting tools -
debiandoc2dbxmlUtility to translate debiandoc-sgml files into docbookxml files -
debiandoc2docbookxmloverview of the DebianDoc-SGML formatting tools -
debiandoc2dvioverview of the DebianDoc-SGML formatting tools -
debiandoc2dvipsDebian SGML formatting scripts -
debiandoc2htmloverview of the DebianDoc-SGML formatting tools -
debiandoc2infooverview of the DebianDoc-SGML formatting tools -
debiandoc2latexoverview of the DebianDoc-SGML formatting tools -
debiandoc2latex2eDebian SGML formatting scripts -
debiandoc2latexdvioverview of the DebianDoc-SGML formatting tools -
debiandoc2latexpdfoverview of the DebianDoc-SGML formatting tools -
debiandoc2latexpsoverview of the DebianDoc-SGML formatting tools -
debiandoc2loutDebian SGML formatting scripts -
debiandoc2pdfoverview of the DebianDoc-SGML formatting tools -
debiandoc2potease translating DebianDoc SGML documents -
debiandoc2psoverview of the DebianDoc-SGML formatting tools -
debiandoc2sgmloverview of the DebianDoc-SGML formatting tools -
debiandoc2texinfooverview of the DebianDoc-SGML formatting tools -
debiandoc2textoverview of the DebianDoc-SGML formatting tools -
debiandoc2textovoverview of the DebianDoc-SGML formatting tools -
debiandoc2wikioverview of the DebianDoc-SGML formatting tools -
debiandoc2xmloverview of the DebianDoc-SGML formatting tools -
debianizegenerate a Debian directory for a package -
debianize-debianize a VDR plugin source archivevdrplugin -
debimangenerate a static manpage HTML repository out of a Debian archive -
debiman-serves HTTP redirectsauxserver -
debiman-converts an auxserver index into an Apache RewriteMapidx2rwmap -
debiman-serve a manpage repository for development purposesminisrv -
debirfbuild an initrd to boot a full Debian system entirely from RAM -
debitinstall (and test) current version of generated Debian package -
deblintCheck binary package for errors -
debmakeprogram to make a Debian source package -
debmanread man pages from uninstalled packages -
debmanyselect manpages or documentation files from installed packages, packages from the repository or .deb-files for viewing using "man", "sensible-pager" or an alternative viewer. -
debmirrorDebian partial mirror script, with ftp, http or rsync and package pool support -
debmstdTool for generating single + multi binary packages and setting up scriptfiles -
debnest_make -
debomaticAutomatic build machine for Debian source packages -
debootsnapcreate debian chroot using snapshot.debian.org -
deborphanOrphaned package finder -
debosDebian OS images builder -
debpackagesa fast unix command line interface to WWW services -
debpartial -
debpartial-debpartial-mirror is a program to generate partial Debian packages archives mirrors.mirror -
debpatchApplies a patch to recreate a debian package. -
debpearautomatically builds and installs PEAR packages as Debian packages -
debpkgwrapper for dpkg -
debputyManifest style Debian-based package builder -
debramlook .debs up in the Debian Ramification -
debrebuilduse a buildinfo file and snapshot.d.o to recreate binary packages -
debreleasea wrapper around dupload or dput -
debreproreproducibility tester for Debian packages -
debrosterprograms to gloat at expos. -
debrsignremotely sign a Debian .changes and .dsc file pair using SSH -
debruijnde Bruijn sequence generator -
debsecanDebian Security Analyzer -
debsig-Verify signatures for a Debian format packageverify -
debsignsign a Debian .changes and .dsc file pair using GPG -
debsnapretrieve old snapshots of Debian packages -
debspawnBuild in nspawn containers -
debspawn-Build Debian packages in a containerbuild -
debspawn-Create new container imagescreate -
debspawn-Remove a container imagedelete -
debspawn-List information about container imageslist -
debspawn-Open interactive shell session in a containerlogin -
debspawn-Run various maintenance actionsmaintain -
debspawn-Run arbitrary commands in debspawn container sessionrun -
debspawn-Update a container imageupdate -
debstdTool for generating single + multi binary packages and setting up scriptfiles -
debsumscheck the MD5 sums of installed Debian packages -
debtagsDebian Package Tags support tools -
debtags-Search and categorize Debian packagesedit -
debtags-fetch tag sources from /etc/debtags/sources.listfetch -
debtags-submit tag patches to http://debtags.debian.netsubmit- patch -
debtags-Update Debtags information in control filesupdatecontrol -
debtorrent-download files using a scatter-gather networkclient -
debtorrent-debtorrent trackertracker -
debtreeshow relationships between packages -
debug-secure remote debuggingme -
debugappA wrapper for openapp. -
debugcalSpecialty programs of the Radiance package, used by experts -
debugeditdebug source path manipulation tool -
debugedit-Checks whether ELF archive members should be processedclassify- ar -
debugimprints the raw image data of a vasari file format -
debuginfo-redirecting to DNF debuginfo-install Plugin Install the associated debuginfo packages for a given package specification.install -
debuginfod-request debuginfo-related datafind -
debuglevelsets the debug level for the non-realtime part of LinuxCNC -
debugperlThe Perl 5 language interpreter -
debugshDebug shell for a Palm Handheld device -
debugvdrRuns the VDR debugging binary with the GDB debugger. -
debuildbuild a Debian package -
debuild-A "debuild" wrapper to satisfy build-dependency before debuildpbuilder -
debusineCommand line client to interact with a Debusine server -
debusine-Administration command for the Debusine serveradmin -
debusine-Signing service for debusinesigning -
debusine-Standalone daemon handling work requests for a debusine serverworker -
debvm-Create a VM image for various Debian releases and architecturescreate -
debvm-Run a VM image created by debvm-createrun -
debvm-Wait for a ssh server to be reachablewaitssh -
decaf-check a Decaf source file for semantic errorslint -
decaf-simulate a Decaf source filesim -
decafccheck a Decaf parse tree for semantic errors -
decasifyConvert prose strings to other cases following locale specific rule sets -
decayscreenmake a screen meltdown. -
Dechargerlibrary for LC/MS data management and analysis - tools -
dechunkNo manpage for this program, utility or function. -
decibel-a simple audio playeraudio- player -
decibel-Control Decibel Audio Player remotelyaudio- player- remote -
deckConfiguration management for Kong and Kong Enterprise -
declonebreak hardlinks -
decovisual shell for UNIX -
decode-No manpage for this program, utility or function.b -
decode-decode the information found in memory module SPD EEPROMsdimms -
decode-decode the information found in the Sony Vaio laptop identification EEPROMsvaio -
decode_decode_and_encodeand_ encode -
decode_Convert APRS raw data to human readable form.aprs -
decode_reveal the sender of a sugarplum teergrube addressteergrube -
decodemaildecode messages. -
decoderrThe Inter-Language Unification system -
decommentremove comments from C and C++ files -
decomposepart of OpenFOAM (The Open Source CFD Toolbox).Par -
decompylea Python byte-code decompiler -
decompyle2.a Python byte-code decompiler2 -
decopyAutomatic debian/copyright generator -
decorateconvert fields of various formats -
Decoylibrary for LC/MS data management and analysis - toolsDatabase -
decrypt802.11b packet decryption tool -
decryptdirencrypt/decrypt all files in a directory -
decspeedNo manpage for this program, utility or function. -
deditDice Simple Editor with GNOME -
dedupe.Simplifies assemblies by removing duplicate or containedsh -
dee-Tool for introspecting dee data.tool -
deejaydA media player daemon. -
deepin-the picture manager from UOSalbum -
deepin-Calculator for deepincalculator -
deepin-package manager for deepin.deb- installer -
deepin-install wine application for deepin-deb-installer.deb- installer- depends Install -
deepin-convert between .desktop file and .ts file to ease translationdesktop- ts- convert -
deepin-generate mo file from po file using deepin ini config filegenerate- mo -
deepin-the picture manager from UOSimage- viewer -
deepin-log viewer for deepin.log- viewer -
deepin-Deepin movie playermovie -
deepin-Deepin music playing applicationmusic -
deepin-Deepin notifications servicenotifications -
deepin-Color picker tool for deepinpicker -
deepin-convert between policykit XML file and ts file to ease translationpolicy- ts- convert -
deepin-Simple recorder tools for deepinscreen- recorder -
deepin-Advanced screen shoting toolscreenshot -
deepin-Pop-up shortcut viewer for Deepin applicationsshortcut- viewer -
deepin-Deepin terminal emulator applicationterminal -
deepin-generate pot file according to given ini config fileupdate- pot -
deepin-Deepin's voice recordervoice- recorder -
deepnano_basecaller for Oxford Nanopore MinION reads based on deep recurrent neural networksbasecall -
deepnano_basecaller for Oxford Nanopore MinION reads based on deep recurrent neural networksbasecall_ no_ metrichor -
defaultindex of FreeBSD shell built-in commands -
DefaultsNo manpage for this program, utility or function. -
defaultsread or modify GNUstep user defaults -
defid[DESCRIPTION] -
DefineRepertoire clonal assignment toolkit (Python 3)Clones. py -
defmt-a sample ispell deformatter for C, C++, and shell sourcesc -
defmt-a sample ispell deformatter for C, C++, and shell sourcessh -
defncopyextract procedures and views from a Microsoft server. -
defomaDebian Font Manager, a framework for automatic font configuration. -
defoma-configure a specific application about fonts registered in Debian Font Manager.app -
defoma-register/unregister font(s) to Debian Font Managerfont -
defoma-generate font hints.hints -
defoma-hints. fr -
defoma-Manage id-cache of Debian Font Managerid -
defoma-id. fr -
defoma-register fonts installed in a PostScript printer.psfont- installer -
defoma-Reconfigure all from zero.reconfigure -
defoma-reconfigure. fr -
defoma-Modify a rulefile of Defoma font substitution system.subst -
defoma-Debian Font Manager for usersuser -
defoma.fr -
deformedpart of OpenFOAM (The Open Source CFD Toolbox).Geom -
deghosting_Creates mask for removing ghosting in imagesmask -
degrep -
deheaderreport which includes in C or C++ compiles can be removed -
dehtmldiffget usable diff from an HTML page -
dehydratedACME client implemented as a shell-script -
dejaa fast unix command line interface to WWW services -
deja-a desktop backup tooldup -
deja-backup your datadup- monitor -
deja-manual page for deja-dup-preferences 34.3dup- preferences -
dejagnuDejaGnu auxiliary command launcher -
dejagnu-display manual pages for DejaGnu auxiliary commandshelp -
dejagnu-summarize results from testing multiple toolsreport- card -
dejasearchA front-end to the deja.com Usenet search engine -
dekenExternals wrangler for Pure Data -
del-add-node-componentnode- component -
delaunayconstructs the constrained Delaunay triangulation of the input -
delaya constant delay generator -
delcrremoves a CR (\015) at the end of each line of input, if a CR is present. -
deletalla collection of tools for xbase database files -
delete_Deletes spam tickets from Trac.spam -
delheadSet FITS or IRAF header keyword values -
deliver -
dellSMBIOS management/utility programBios Update -
dellsrc/bin/smbios-lcd-brightnessLcd Brightness -
dellsrc/bin/smbios-wireless-ctlWireless Ctl -
dellycall, discover and genotype structural variants -
delpThe Free Pascal file deletion tool. -
delp-The Free Pascal file deletion tool.2. 6. 0 -
delp-The Free Pascal file deletion tool.2. 6. 4 -
delp-The Free Pascal file deletion tool.3. 0. 0 -
delp-The Free Pascal file deletion tool.3. 0. 4 -
delp-The Free Pascal file deletion tool.3. 2. 0 -
delp-The Free Pascal file deletion tool.3. 2. 2 -
deltasyntax-highlighting pager for git, diff, and grep output -
delta-read a delta alignment file from either nucmer or promer and filters the alignmentsfilter -
delta2blocksextra tool for mummer from patch of mugsy to sort alignments delta2maf - extra tool for mummer from patch of mugsy to sort alignments -
delta2mafextra tool for mummer from patch of mugsy to sort alignments delta2maf - extra tool for mummer from patch of mugsy to sort alignments -
deltadb_query historical data stored by the catalog server.query -
deltainfoxml2solvconvert rpm-md's deltainfo format into a solv file -
delugeA BitTorrent client -
deluge-A BitTorrent client console interfaceconsole -
deluge-A BitTorrent client Gtk interfacegtk -
deluge-A BitTorrent client web interfaceweb -
delugedA BitTorrent client daemon -
delvDNS lookup and validation utility -
delveInspect the contents of a Xapian database -
delwcsDelete WCS in FITS and IRAF image files -
delwordsDeleting words from specified dictionary collectively -
demandocemit only text of UNIX manuals -
demangleUndo C++ name mangling for symbols -
Delibrary for LC/MS data management and analysis - toolsMeanderize -
demoGGI demonstration and example programs -
democracyplayera GTK+ based RSS video aggregator -
demoviewerpart of the italc-client package -
demuxConvert XPLOR distance restraints to Gromacs format -
dendropy-convert files from one format to anotherformat -
denemogtk+ frontend to GNU Lilypond -
denemo_file update tool for denemo.file_ update -
Depart of ANTS registration suiteNrrd -
densify-Convert a sparse fileformat (Generated by sparsify-Bragg from pyFAI) to a dense stack of frames in Eiger, Lima ... images.Bragg -
density-Calculates per-residue electron density scores real-space R, real-space correlation coefficient, EDIAm, and OPIAfitness -
density-program to...score- by- residue -
depmanual page for dep -
dep-Convert git repository branch names to follow DEP-14.14- convert- git- branch- names -
dep.a script to check dependenciespl -
dep.dep.pl configuration utilitypl- config -
dep3changeloggenerate a changelog entry from a DEP3-style patch header -
depdiagram-KDE API documentation generation toolsgenerate -
depdiagram-KDE API documentation generation toolsgenerate- all -
depdiagram-Generate Graphviz dot files for one or all frameworksprepare -
deploy_A cookbook for MySQL Sandboxto_ remote_ sandboxes -
depmodhandle loadable modules automatically -
depqbfa solver for quantified boolean formulae -
depscanDetect binary dependencies -
depthchargectlManage the ChromeOS bootloader and its boot images -
depthutilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length. mergePolishes - merge alignments from multiple files sortPolishes - sort alignments by cDNA or genomic sequence index or sequence name convertToExtent - Convert from sim4db format to a single-line tab-delimited format fixPolishesIID - Updates a sim4db file to use the sequence index of a specific fasta file. Can also be used to extract a subset of the alignments from the sim4db file. depthOfPolishes - Outputs a tab-delimited histogram of the depth of polishes at various window sizes. headPolishes - print the first N alignments in a file, similar to head(1) pickBestPolish - report only the 'best' alignment for each cDNA pickUniquePolish - reports alignments where there is a clear single best alignment for each cDNA. plotCoverageVsIdentity - Generates (1) a histogram of the percent identity, (2) a histogram of the percent coverage, and (3) a list of percent identity and coverage (for use in a scatter plot). uniqPolishes - Filters out all alignments for cDNA with multiple alignments (-uniq) or with a single alignment (-dupl). Similar to uniq(1) realignPolishes - recompute the alignments listed in a sim4db file. reportAlignmentDifferences - generates a histogram of the types of errors in a set of alignments Unsupported and Deprecated comparePolishes - Correlate alignments in two files. convertToAtac - Converts from sim4db format to ATAC format. detectChimera - Examines alignments for sequences that might be chimeric. mappedCoverage - Reports the amount of the query sequence (EST, cDNA) that is covered by alignments. parseSNP - Analyzes alignments for SNPs. removeDuplicate - searches the input for duplicate alignments. vennPolishes - Generates a Venn diagram for multiple sim4db files. Used internally by ESTMapper cleanPolishes summarizePolishesOf Polishes -
der2dmkTools for handling DMK disk image files -
derbdisassemble a resource bundle -
derdumpDumps C-sequence strings from a DER encoded certificate file -
derefsymlinkdereference symbolic links -
deriveDeriving instances for data types in Haskell -
derivingcamlp4 with deriving syntax extension. -
deroffremove roff and preprocessor constructs -
desaggregartpReorders incoming packets and reconstitutes the original RTP stream. -
describe-describe a Theme-D-Intr callback typecb- type -
design-No manpage for this program, utility or function.matrix -
design_for designing directional couplers (part of the atlc package)coupler -
designerVisual user interface designer for Qt. -
designer-Visual user interface designer for Qt.qt3 -
designer-Visual user interface designer for Qt4.qt4 -
deskflowmanual page for Deskflow: 1.22.0 -
deskflow-manual page for deskflow-client v1.22.0.0, protocol v1.8client -
deskflow-manual page for deskflow-server v1.22.0.0, protocol v1.8server -
deskguide_Desk Guide Applet for the GNOME panel.applet -
desklauncha small utility for creating desktop icons -
deskmenuA root menu for X -
desktop-Desktop Session Autoloader Launch Scriptautoloader -
desktop-compare MIME types in installed .desktop filescheck- mime- types -
desktop-Installation and edition of desktop filesfile- edit -
desktop-Installation and edition of desktop filesfile- install -
desktop-Validate desktop entry filesfile- validate -
desktop-do stuff with menu filesmenu- tool -
desktop2menucreate a menu file skeleton from a desktop file -
desktopcouch-A tool used to pair desktop CouchDBs.pair -
desktopnovachange your desktop wallpaper automatically -
desktopnova-daemon for desktopnovadaemon -
desktopnova-control the DesktopNova daemontray -
desmumeNintendo DS emulator -
desmume-Nintendo DS emulatorcli -
desmume-Nintendo DS emulatorglade -
desproxya TCP tunnel for HTTP proxies -
desproxy-DNS for dynamic connectionsdns -
desproxy-Desproxy for inetdinetd -
desproxy-Using desproxy with dynamic connectionssocksserver -
destroydbdestroy an existing database -
destroyuserdestroy a Postgres user and associated databases -
desyncContent-addressed binary distribution system -
desync-Read indexes and copy the referenced chunkscache -
desync-Stream a blob to stdout or a file-like objectcat -
desync-Read chunks from a file according to an indexchop -
desync-Chunk input file and print chunk boundaries and IDschunk -
desync-Server for chunks over HTTP(S)chunk- server -
desync-Generate the autocompletion script for the specified shellcompletion -
desync-Generate the autocompletion script for bashcompletion- bash -
desync-Generate the autocompletion script for fishcompletion- fish -
desync-Generate the autocompletion script for powershellcompletion- powershell -
desync-Generate the autocompletion script for zshcompletion- zsh -
desync-Show or write config fileconfig -
desync-Read an index and build a blob from itextract -
desync-Server for indexes over HTTP(S)index- server -
desync-Show information about an indexinfo -
desync-Inspect chunks from an index and an optional local storeinspect- chunks -
desync-List chunk IDs from an indexlist- chunks -
desync-Chunk input file and create indexmake -
desync-Generate manpages for desyncmanpage -
desync-FUSE mount an index filemount- index -
desync-Print the content of a catar, caidx or local directory in mtree formatmtree -
desync-Remove unreferenced chunks from a storeprune -
desync-Serve chunks via casync protocol over SSHpull -
desync-Store a directory tree in a catar archive or indextar -
desync-Extract a directory tree from a catar archive or indexuntar -
desync-Read chunks in a store and verify their integrityverify -
desync-Verify an index matches a fileverify- index -
desync-Show the desync versionversion -
detachttyrun an interactive program with io to a unix-domain socket -
detcasDeterminant Configuration Interaction / Complete Active Space Self-Consistent-Field Program -
detcasmanDeterminant Configuration Interaction / Complete Active Space Self-Consistent-Field Program Manager -
detciDeterminant Configuration Interaction Program -
detectdetects hardware on a system -
detect-find and list requirements of a Python projectrequirements -
detectutilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length. mergePolishes - merge alignments from multiple files sortPolishes - sort alignments by cDNA or genomic sequence index or sequence name convertToExtent - Convert from sim4db format to a single-line tab-delimited format fixPolishesIID - Updates a sim4db file to use the sequence index of a specific fasta file. Can also be used to extract a subset of the alignments from the sim4db file. depthOfPolishes - Outputs a tab-delimited histogram of the depth of polishes at various window sizes. headPolishes - print the first N alignments in a file, similar to head(1) pickBestPolish - report only the 'best' alignment for each cDNA pickUniquePolish - reports alignments where there is a clear single best alignment for each cDNA. plotCoverageVsIdentity - Generates (1) a histogram of the percent identity, (2) a histogram of the percent coverage, and (3) a list of percent identity and coverage (for use in a scatter plot). uniqPolishes - Filters out all alignments for cDNA with multiple alignments (-uniq) or with a single alignment (-dupl). Similar to uniq(1) realignPolishes - recompute the alignments listed in a sim4db file. reportAlignmentDifferences - generates a histogram of the types of errors in a set of alignments Unsupported and Deprecated comparePolishes - Correlate alignments in two files. convertToAtac - Converts from sim4db format to ATAC format. detectChimera - Examines alignments for sequences that might be chimeric. mappedCoverage - Reports the amount of the query sequence (EST, cDNA) that is covered by alignments. parseSNP - Analyzes alignments for SNPs. removeDuplicate - searches the input for duplicate alignments. vennPolishes - Generates a Venn diagram for multiple sim4db files. Used internally by ESTMapper cleanPolishes summarizePolishesChimera -
detector2nexusConverts a detector description into a NeXus detector usable by other pyFAI utilities -
determine-ea-utils: read sam, fastq or pileup and return the phred-scalephred -
detexa filter to strip TeX commands from a .tex file. -
detexamNo manpage for this program, utility or function. -
detexam-No manpage for this program, utility or function.old -
detokOpenBIOS detokenizer -
detoxclean up filenames -
detrend-No manpage for this program, utility or function.transform -
detricktool to debug libtricks. As the environment variable parsing is rather complicated, it can also be used by users of libtricks to find out why libtricks is behaving the way it does. -
deurlnameRemove URL-encoded characters from file names. -
dev.Browse the Fediversegeopjr. Tuba -
devcalAn FM deviation calibration utility for the SvxLink system -
devdumpUtility programs for dumping and verifying iso9660 images. -
devedeA simple application to create Video DVDs -
developers-guidelines and information for Debian developersreference -
devhelpAn API documentation browser -
devhelp-A developers help program.bin -
device-Tool to query Device Information via libdeviceinfoinfo -
device-parses simple device tables and passes to mknodtable. pl -
devilspieperform actions on windows as they are created -
devilspie2perform scripted actions on windows as they are created -
devioprogram to read and write from block devices -
devmonAutomounts and unmounts optical and removable drives -
devnagDevanagari for TeX preprocessor -
devscriptsscripts to ease the lives of Debian developers -
devtodoa reminder/task program aimed at developers -
dewarp_image processing libraryreg -
dewarptest1image processing library -
dewebstrips away C & CWEB commands from CWEB sources -
dexDesktopEntry Execution -
dexconfgenerate Xorg X server configuration file from debconf data -
dexdumpDex Tool -
dexeconfigconfigures dexec files -
dexlistDex Tool -
dexqvcompress a set of .quiva files -
dextacompress a set of .fasta files -
dextractpull information needed for assembly from source HDF5 files made by PacBio RS II sequencer
df
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dfreport file system space usage -
dfarcAn integrated frontend and .dmod installer. -
dfb++-script to get information about the installed version of dfb++config -
dfbgDirectFB background configuration tool -
dfcreport file system space usage information with style -
dffA powerful, efficient and modular digital forensics tool. -
dfg2asciitransforms DFG files into pretty printed ASCII files -
dfg2dfgcalculate approximations of problems -
dfg2ottertransforms DFG clause files into Otter format -
dfg2otter.transforms DFG clause files into Otter format including Otter optionspl -
dfg2tptptransforms DFG files into TPTP files -
dfgrep -
dfiThe Deferred Frequency Index -
dfical-parse an iCal file and create a QSF XML pilot_datebook instance.datebook -
dfinvoice-parse a QSF XML file show future bookingsfuture -
dfinvoice-parse a QSF XML file show pending paymentsmonth -
dfitsdisplay FITS file header information -
dfoDesktop Flickr Organizer for Gnome -
dfont2resconvert Macintosh dfont font file format to Macintosh resource fork format -
dfontmgrGUI frontend for defoma -
dfrouterBuilds vehicle routes for SUMO using detector values -
dfrsDisplay file system space usage using graphs and colors -
dfsbuildGenerate custom Debian From Scratch CD images -
dfsqlite-convert a gpe-todo sqlite database into pilot-qof datapilottodo -
dftestShows display filter byte-code, for debugging dfilter routines. -
dfu-add, check, or remove special firmware file prefixprefix -
dfu-USB firmware upgrading for Atmel microcontrollersprogrammer -
dfu-add, check, or remove DFU firmware file suffixsuffix -
dfu-dfu-tooltool -
dfu-Device firmware update (DFU) USB programmerutil -
dfutoolDevice Firmware Upgrade utility -
dfvcard-parse a vCard file and prepare a QSF XML filepilotaddress -
dfvtodo-parse a vTodo file and create a QSF XML pilot_todo instance for each todo entry.pilottodo -
dfxml-parse a QSF XML file and prepare a CSV invoice for homebankhomebank -
dfxml-parse a QSF XML file and prepare a simple invoiceinvoice -
dfxml-parse a QSF XML file and summarise mileage expensesmileage