density-score-by-residue1

Usage

Overview

density-score-by-residue is a part of the Coot suite of programs.

Options

These programs follow the usual GNU command line syntax, with long options starting with two dashes (-). A summary of options is included below.

--pdbin=file

Input PDB file name

--hklin=file

MTZ file containing structure factors

--f=label

label of MTZ file column containing structure factor amplitudes

--phi=label

label of MTZ file column containing structure factor phases

--weight=label

Label of weight column in MTZ file

--score-atoms

--cut

cut out badly scoring residues

--cut-level=level

Set (absolute) density level below which we can cut out residues

--pdbout=file

Output PDB file name