seqsplit1
Split seqs into chunks of defined size and overlap
Usage
seqsplit [-options]
<seqfile>
Overview
This manual page documents briefly the seqsplit command.
seqsplit is a program that splits sequences into smaller chunks of defined size and overlap; output a FASTA file.
Options
-
-h -
Help; display usage and version.
-
-o <file> -
Output the new FASTA file to <file>.
-
--fragfile <f> -
Save one-line-per-frag coord summary file to <f>.
-
--informat <s> -
Specify sequence file format <s>.
-
--length <n> -
Set max length of each unique seq frag to <n>.
-
--overlap <n> -
Set overlap length to <n> (total frag size = length+overlap).
-
--shortnames -
Use short "frag1" names, not "<src>/<from>-<to>".
Limitations
Still working in 32 bits -- no sequence can be more than 2 GB in size.
Releases
Unchanged in 10 releases since Debian 4.0 (Etch).