weight1
Calculates sequence weights for an alignment
Usage
weight [-options]
<alignment
file>
Overview
This manual page documents briefly the weight command.
weight is a program that calculates weights for a sequence alignment.
Options
Available options:
-
-b <f> -
Use BLOSUM weighting scheme at <f> fractional identity.
-
-f <f> -
Filter out seqs w/ fractional ident > <x> [0-1].
-
-h -
Help; print version and usage info.
-
-o <file> -
Save weight-annotated alignment in <outfile>.
-
-p -
Use position based weight scheme (Henikoff & Henikoff).
-
-s <n> -
Sample <n> sequences at random into a new alignment.
-
-v -
Use Voronoi weight scheme (Sibbald & Argos).
-
--informat <s> -
Specify alignment file format <s>.
Allowed formats: SELEX, MSF, Clustal, a2m, PHYLIP.
-
--quiet -
Suppress verbose banner.
Releases
Unchanged in 10 releases since Debian 4.0 (Etch).