mapMers-depth1
Report information about mapping kmers to sequences
Usage
mapMers-depth {-count | -depth | -stats}
-mers
MERYL
-m
MERSIZE
-seq
IN.FASTA
Options
Modes of operation
For sequence ordinal 's' and position in that sequence 'p':
-
-count -
reports the count (c) of the single kmer that starts at position (p).
-
Format: 's p c'
-
-depth -
reports the number (n) of kmers that span position (p).
-
Format: 's p n'
-
-stats -
reports the minimum (m), maximum (M), and average (a) count of all mers that span position (p). also reports total count (t) and number of kmers (n)
-
Format: 's p m M a t n'
General
-mMERSIZE
-mersMERYL-
meryl(1) database
-seqIN.FASTA-
fasta input sequence
Releases
Unchanged in 5 releases since Debian 9 (Stretch).