mapMers1
Report statistics of mapping kmers to sequences
Usage
mapMers {-stats | -regions | -details}
-m
mersize
-mers
mers
-seq
fasta
Options
-
-stats -
reports the mean, minimum, and maximum for each sequence, along with a log2 histogram of the counts
-
-regions -
reports regions with kmer coverage
-
-details -
reports the forward and reverse count in the database for each kmer in the sequence
-mmersize
-mersmers-
the meryl(1) database
-seqfasta-
input sequence file
Releases
Unchanged in 5 releases since Debian 9 (Stretch).