graphlan1
Circular representations of taxonomic and phylogenetic trees
Usage
graphlan [-h]
[--format
['output_image_format']]
[--warnings
WARNINGS]
[--positions
POSITIONS]
[--dpi
image_dpi]
[--size
image_size]
[--pad
pad_in]
[--external_legends]
[-v]
input_tree
output_image
Overview
GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. It focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.
Options
positional arguments:
- input_tree
-
the input tree in PhyloXML format
- output_image
-
the output image, the format is guessed from the extension unless
--formatis given. Available file formats are: png, pdf, ps, eps, svg
optional arguments:
-
-h, --help -
show this help message and exit
-
--format ['output_image_format'] -
set the format of the output image (default none meaning that the format is guessed from the output file extension)
-
--warnings WARNINGS -
set whether warning messages should be reported or not (default 1)
-
--positions POSITIONS -
set whether the absolute position of the points should be reported on the standard output. The two cohordinates are r and theta
-
--dpi image_dpi -
the dpi of the output image for non vectorial formats
-
--size image_size -
the size of the output image (in inches, default 7.0)
-
--pad pad_in -
the distance between the most external graphical element and the border of the image
-
--external_legends -
specify whether the two external legends should be put in separate file or keep them along with the image (default behavior)
-
-v, --version -
Prints the current GraPhlAn version and exit
Releases
Unchanged in 5 releases since Debian 9 (Stretch).