domainrep1e
Reorder dcf file to identify representative structures.
Usage
domainrep -dcfinfile
infile
-node
list
-dcfoutfile
outfile
domainrep -help
Overview
domainrep is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Protein:3D Structure" command group(s).
Options
Input section
-
-dcfinfile infile -
This option specifies the name of DCF file (domain classification file) (input). A 'domain classification file' contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence information can be added to the file by using DOMAINSEQS.
Required section
-
-node list -
This option specifies the node fore reordering the file. Reordering can be done for any specified node in the SCOP or CATH hierarchies. For example by selecting 'Class' entries belonging to the same Class will be reordered in turn. Default value: 1
Output section
-
-dcfoutfile outfile -
This option specifies the name of DCF file (domain classification file) (output). A 'domain classification file' contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence information can be added to the file by using DOMAINSEQS. Default value: test.scop
Releases
Unchanged in 7 releases since Debian 7 (Wheezy).