domainrep1
Reorder dcf file to identify representative structures.
Usage
domainrep -dcfinfile
infile
-node
list
-dcfoutfile
outfile
domainrep -help
Overview
domainrep is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Protein:3D Structure" command group(s).
Options
Input section
-
-dcfinfile infile -
This option specifies the name of DCF file (domain classification file) (input). A ´domain classification file´ contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence information can be added to the file by using DOMAINSEQS.
Required section
-
-node list -
This option specifies the node fore reordering the file. Reordering can be done for any specified node in the SCOP or CATH hierarchies. For example by selecting ´Class´ entries belonging to the same Class will be reordered in turn. Default value: 1
Output section
-
-dcfoutfile outfile -
This option specifies the name of DCF file (domain classification file) (output). A ´domain classification file´ contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence information can be added to the file by using DOMAINSEQS. Default value: test.scop