complex1e
Find the linguistic complexity in nucleotide sequences
Usage
complex -sequence
seqall
-lwin
integer
-step
integer
-jmin
integer
-jmax
integer
-omnia
toggle
-sim
integer
-freq
boolean
-print
boolean
-outfile
outfile
-ujtablefile
outfile
-outseq
seqoutall
complex -help
Overview
complex is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Composition" command group(s).
Options
Input section
-
-sequence seqall
-
-lwin integer -
Default value: 100
-
-step integer -
Displacement of the window over the sequence Default value: 5
-
-jmin integer -
Default value: 4
-
-jmax integer -
Default value: 6
Advanced section
-
-omnia toggle -
Calculate over a set of sequences Default value: N
-
-sim integer -
Calculate the linguistic complexity by comparison with a number of simulations having a uniform distribution of bases
-
-freq boolean -
Execute the simulation of a sequence based on the base frequency of the original sequence Default value: N
Output section
-
-print boolean -
Generate a file named UjTable containing the values of Uj for each word j in the real sequence(s) and in any simulated sequences Default value: N
-
-outfile outfile
-
-ujtablefile outfile -
Default value: complex.ujtable
-
-outseq seqoutall
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.