cnvkit-import-theta1
Convert theta output to a bed-like, cnvkit-like tabular format. equivalently, use the theta results file to convert cnvkit .cns segments to integer copy number calls.
Overview
usage: cnvkit.py import-theta [-h] [--ploidy PLOIDY] [-d DIRECTORY]
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tumor_cns theta_results
positional arguments:
-
tumor_cns theta_results
options:
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-h, --help -
show this help message and exit
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--ploidy PLOIDY -
Ploidy of normal cells. [Default: 2]
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-d DIRECTORY, --output-dir DIRECTORY -
Output directory name.
Releases
4 releases since Debian 10 (Buster); the text changed 3 times.