cnvkit-import-theta(1) on Linux
The text 5edf58798f07, as Debian 10 (Buster) shipped it.
Convert THetA output to a BED-like, CNVkit-like tabular format. Equivalently, use the THetA results file to convert CNVkit .cns segments to integer copy number calls.
Flags it lists
-
--help -
--output-dir -
--ploidy -
-d -
-h