dotpath (1e)

Draw a non-overlapping wordmatch dotplot of two sequences

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  4. dotpath: Draw a non-overlapping wordmatch dotplot of two sequences

SYNOPSIS

dotpath -asequence sequence -bsequence sequence -wordsize integer [-overlaps boolean] [-boxit boolean] -graph graph dotpath -help

DESCRIPTION

dotpath is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Dot plots" command group(s).

OPTIONS

Input section

-asequence sequence

-bsequence sequence

Required section

-wordsize integer

Default value: 4

Output section

-overlaps boolean

Displays the overlapping matches (in red) as well as the minimal set of non-overlapping matches Default value: N

-boxit boolean

Default value: Y

-graph graph

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

RELATED TO dotpath…

dotpath is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <[email protected]>

Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.