Master dark and hot pixels mask generation.
esorex sinfo_rec_mdark [OPTIONS] FILE.sof
This recipe perform raw sinfo_dark data reduction.
The input files are raw sinfo_dark images Their associated tags should be DARK.
The output are a master sinfo_dark (PRO.CATG=MASTER_DARK) and a hot pixels bad pixel map (PRO.CATG=BP_MAP_HP)
--gen-overpar <bool>
Overwrite DRS ini parameters: (bool; default: True). The full name of this option for the EsoRex configuration file is sinfoni.general.overwrite_parameters [default = True].
--lc_sw <bool>
Correct for bad lines introduced by instrument software: (bool; default: False). The full name of this option for the EsoRex configuration file is sinfoni.general.lc_sw [default = False].
--lc_kappa <long>
Kappa sigma value (long; default: 18). The full name of this option for the EsoRex configuration file is sinfoni.general.lc_kappa [default = 18].
--lc_filt_rad <long>
Filtering radii applied during median filter. Should be small (long; default: 3). The full name of this option for the EsoRex configuration file is sinfoni.general.lc_filt_rad [default = 3].
--bp_noise-thresh_sigma_fct <float>
Threshold Sigma Factor: If the mean noise exceeds this threshold times the clean standard deviation of the clean mean the corresponding pixels are declared as bad (float; default: 10.0). The full name of this option for the EsoRex configuration file is sinfoni.bp_noise.thresh_sigma_factor [default = 10.0].
--bp_noise-lo_rej <float>
low_rejection: percentage of rejected low intensity pixels before averaging (float; default: 10.0). The full name of this option for the EsoRex configuration file is sinfoni.bp_noise.low_rejection [default = 10.0].
--bp_noise-hi_rej <float>
high_rejection: percentage of rejected high intensity pixels before averaging (float; default: 10.0). The full name of this option for the EsoRex configuration file is sinfoni.bp_noise.high_rejection [default = 10.0].
--dark-lo_rej <float>
lower rejection (float; default: 0.1). The full name of this option for the EsoRex configuration file is sinfoni.dark.low_rejection [default = 0.1].
--dark-hi_rej <float>
higher rejection (float; default: 0.1). The full name of this option for the EsoRex configuration file is sinfoni.dark.high_rejection [default = 0.1].
--dark-qc_ron_xmin <long>
qc_ron_xmin (long; default: 1). The full name of this option for the EsoRex configuration file is sinfoni.dark.qc_ron_xmin [default = 1].
--dark-qc_ron_xmax <long>
qc_ron_xmax (long; default: 2048). The full name of this option for the EsoRex configuration file is sinfoni.dark.qc_ron_xmax [default = 2048].
--dark-qc_ron_ymin <long>
qc_ron_ymin (long; default: 1). The full name of this option for the EsoRex configuration file is sinfoni.dark.qc_ron_ymin [default = 1].
--dark-qc_ron_ymax <long>
qc_ron_ymax (long; default: 2048). The full name of this option for the EsoRex configuration file is sinfoni.dark.qc_ron_ymax [default = 2048].
--dark-qc_ron_hsize <long>
qc_ron_hsize (long; default: 4). The full name of this option for the EsoRex configuration file is sinfoni.dark.qc_ron_hsize [default = 4].
--dark-qc_ron_nsamp <long>
qc_ron_nsamp (long; default: 100). The full name of this option for the EsoRex configuration file is sinfoni.dark.qc_ron_nsamp [default = 100].
--dark-qc_fpn_xmin <long>
qc_fpn_xmin (long; default: 1). The full name of this option for the EsoRex configuration file is sinfoni.dark.qc_fpn_xmin [default = 1].
--dark-qc_fpn_xmax <long>
qc_fpn_xmax (long; default: 2047). The full name of this option for the EsoRex configuration file is sinfoni.dark.qc_fpn_xmax [default = 2047].
--dark-qc_fpn_ymin <long>
qc_fpn_ymin (long; default: 1). The full name of this option for the EsoRex configuration file is sinfoni.dark.qc_fpn_ymin [default = 1].
--dark-qc_fpn_ymax <long>
qc_fpn_ymax (long; default: 2047). The full name of this option for the EsoRex configuration file is sinfoni.dark.qc_fpn_ymax [default = 2047].
--dark-qc_fpn_hsize <long>
qc_fpn_hsize (long; default: 2). The full name of this option for the EsoRex configuration file is sinfoni.dark.qc_fpn_hsize [default = 2].
--dark-qc_fpn_nsamp <long>
qc_fpn_nsamp (long; default: 1000). The full name of this option for the EsoRex configuration file is sinfoni.dark.qc_fpn_nsamp [default = 1000].
Note that it is possible to create a configuration file containing these options, along with suitable default values. Please refer to the details provided by the 'esorex --help' command.
The full documentation for the sinfo pipeline can be downloaded as a PDF file using the following URL:
ftp://ftp.eso.org/pub/dfs/pipelines/sinfoni/sinfo-pipeline-manual-19.0.pdf
An overview over the existing ESO pipelines can be found on the web page http://www.eso.org/sci/software/pipelines/.
Basic documentation about the EsoRex program can be found at the esorex (1) man page.
It is possible to call the pipelines from python using the python-cpl package. See http://packages.python.org/python-cpl/index.html for further information.
The other recipes of the sinfo pipeline are sinfo_utl_cube2spectrum(7), sinfo_rec_jitter(7), sinfo_utl_ima_line_corr(7), sinfo_utl_cube_combine(7), sinfo_utl_bp_mask_add(7), sinfo_utl_skycor(7), sinfo_utl_spectrum_divide_by_blackbody(7), sinfo_rec_mflat(7), sinfo_utl_cube_create(7), sinfo_utl_line_oh_select(7), sinfo_utl_cube2ima(7), sinfo_utl_spectrum_wavelength_shift(7), sinfo_rec_distortion(7), sinfo_rec_pupil(7), sinfo_rec_wavecal(7), sinfo_utl_ima_arith(7), sinfo_utl_cube_arith(7), sinfo_rec_detlin(7), sinfo_utl_skymap(7)
sinfo_rec_mdark 2.5.2
Andrea Modigliani <[email protected]>
Please report any problems to [email protected]. Alternatively, you may send a report to the ESO User Support Department <[email protected]>.
This file is part of the SINFONI Instrument Pipeline Copyright (C) 2002,2003 European Southern Observatory
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA