Index a fasta file database
dbifasta -dbname string -idformat list -directory directory -filenames string -release string -date string -fields list -exclude string -maxindex integer -sortoptions string -systemsort boolean -cleanup boolean -outfile outfile -indexoutdir outdir dbifasta -help
dbifasta is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Utils:Database indexing" command group(s).
-dbname string
-idformat list
Default value: idacc
-directory directory
Default value: .
-filenames string
Default value: *.dat
-release string
Default value: 0.0
-date string
Default value: 00/00/00
-fields list
Default value: acc
-exclude string
-maxindex integer
-sortoptions string
Sort options, typically '-T .' to use current directory for work files and '-k 1,1' to force GNU sort to use the first field Default value: -T . -k 1,1
-systemsort boolean
Default value: Y
-cleanup boolean
Default value: Y
-outfile outfile
-indexoutdir outdir
Default value: .
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
dbifasta is fully documented via the tfm(1) system.
Debian Med Packaging Team <[email protected]>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.