Index a blast database
dbiblast -dbname string -directory directory -filenames string -release string -date string -seqtype list -blastversion list -fields list -exclude string -sortoptions string -maxindex integer -systemsort boolean -cleanup boolean -sourcefile boolean -outfile outfile -indexoutdir outdir dbiblast -help
dbiblast is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Utils:Database indexing" command group(s).
-dbname string
-directory directory
Default value: .
-filenames string
Default value: $(dbname)
-release string
Default value: 0.0
-date string
Default value: 00/00/00
-seqtype list
Default value: unknown
-blastversion list
Default value: unknown
-fields list
Default value: acc
-exclude string
-sortoptions string
Sort options, typically '-T .' to use current directory for work files and '-k 1,1' to force GNU sort to use the first field Default value: -T . -k 1,1
-maxindex integer
-systemsort boolean
Default value: Y
-cleanup boolean
Default value: Y
-sourcefile boolean
-outfile outfile
-indexoutdir outdir
Default value: .
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
dbiblast is fully documented via the tfm(1) system.
Debian Med Packaging Team <[email protected]>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.