1 User commands

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sn

sn Digitally sign/verify/compare strongnames on CLR assemblies.
sn0int Semi-automatic OSINT framework and package manager todo
snac A simple, minimalistic ActivityPub instance
snacc ASN.1 to C, C++ or type table Compiler
snacc-config script to get information about the installed version of snacc
snacced Graphical editor for BER encoded ASN.1 files
snakemake a Python based language and execution environment for GNU Makelike workflows
snap Tool to interact with snaps
snap-aligner scalable nucleotide alignment program
snap-aligner-index scalable nucleotide alignment program
snap-aligner-paired scalable nucleotide alignment program
snap-aligner-single scalable nucleotide alignment program
snap-hmm Semi-HMM-based Nucleic Acid Parser
snap2tzx Convert ZX Spectrum snapshot to .tzx tape images
snapclient Snapcast client
SNAPCommand scalable nucleotide alignment program
snapconv Sinclair ZX Spectrum snapshot converter
snapdump List contents of Sinclair ZX Spectrum snapshot files
snapinst an user installer for snap
snappea for creating and studying hyperbolic 3-manifolds
snappea-console for creating and studying hyperbolic 3-manifolds
snappy Snappy compression and decompression with and without framing
snappyHexMesh part of OpenFOAM (The Open Source CFD Toolbox).
snappyRefineMesh part of OpenFOAM (The Open Source CFD Toolbox).
snapraid SnapRAID Backup For Disk Arrays
snapserver Snapcast server
snapshot.cgi CGI program to rebuild the Xymon webpages for a specific point in time.
snarf Simple Non-interactive All-purpose Resource Fetcher
snavigator No manpage for this program, utility or function.
snd a sound editor
snd.gtk-jack a sound editor
snd.gtk-pulse a sound editor
snd.gui-jack a sound editor
snd.gui-pulse a sound editor
snd.nox a sound editor
sndAppleSingle No manpage for this program, utility or function.
sndfile-cmp compare two audio files
sndfile-concat concatenate audio data from two or more audio files
sndfile-convert convert sound files from one format to another
sndfile-deinterleave convert mono files into a multi-channel file and vice versa
sndfile-generate-chirp generate a sound file containing a chirp
sndfile-info display information about sound files
sndfile-interleave convert mono files into a multi-channel file and vice versa
sndfile-jackplay play a sound file via the JACK sound server
sndfile-metadata-get get or set metadata in a sound file
sndfile-metadata-set get or set metadata in a sound file
sndfile-mix-to-mono mix a multi-channel sound file to mono
sndfile-play play a sound file
sndfile-resample sample rate converter
sndfile-salvage salvage audio data from WAV files longer than 4G
sndfile-spectrogram generate a spectrogram from an input sound file
sndinfo Utilities for Csound
sndioctl manipulate audio device controls
sndtorock2 utility programs for editing voice files
sndtorock3 utility programs for editing voice files
sndtorock4 utility programs for editing voice files
snek Snek Programming Language
snek-atmega32u4-install Install Snek to ATmega32u4
snek-board-install Install Snek to Snek Board
snek-duemilanove-big-install Install larger version of Snek to Arduino ATmega328 board
snek-duemilanove-install Install Snek to Duemilanove
snek-grove-install Install Snek to Arduino Uno
snek-itsybitsy-install Install Snek to Adafruit ItsyBitsy board
snek-lilypad-big-install Install larger version of Snek to Arduino ATmega328 board
snek-lilypad-install Install Snek to LilyPad
snek-mega-install Install Snek to Arduino Mega
snek-narrow-1284-install Install Snek to Narrow 1284 board
snek-uduino-install Install Snek to Adafruit ItsyBitsy board
snek-uno-big-install Install larger version of Snek to Arduino ATmega328 board
snek-uno-install Install Snek to Uno
snekde Snek Development Environment
sng compiler/decompiler for Scriptable Network Graphics
sng_regress a regression test harness for sng
sni-daemon Background service program of SNI protocol.
sni-xembed-proxy Background service program of X to SNI protocol protocol.
snice send a signal or report process status
sniffglue secure multithreaded packet sniffer
sniffles structural variation caller using third-generation sequencing
snimpy interactive SNMP tool with Python
snixembed proxy the StatusNotifierItem protocol to the XEmbed System Tray
snmp simple SNMP client
snmp-bridge-mib provide Linux bridge information via SNMP
snmpbulkget communicates with a network entity using SNMP GETBULK requests.
snmpbulkwalk retrieve a subtree of management values using SNMP GETBULK requests
snmpc SNMP MIB compiler frontend
snmpcheck check hosts SNMP access
snmpcmd options and behaviour common to most of the Net-SNMP command-line tools
snmpconf creates and modifies SNMP configuration files
snmpdelta Monitor delta differences in SNMP Counter values
snmpdf display disk space usage on a network entity via SNMP
snmpget communicates with a network entity using SNMP GET requests
snmpgetnext communicates with a network entity using SNMP GETNEXT requests
snmpinform sends an SNMP notification to a manager
snmpnetstat display networking status and configuration information from a network entity via SNMP
snmpnetstat53 display networking status and configuration information from a network entity via SNMP
snmpping command an agent to ping a remote host
snmpps display process table on a network entity via SNMP
snmprec SNMP Agents Recording tool
snmpset communicates with a network entity using SNMP SET requests
snmpsim-datafile SNMP simulator data files management and repair tool
snmpsim-mib2dev converts MIB modules into SNMP Simulator data files
snmpsim-pcap2dev converts PCAP captures into SNMP Simulator data files
snmpsimd SNMP Agents Simulation tool
snmpstatus retrieves a fixed set of management information from a network entity
snmptable retrieve an SNMP table and display it in tabular form
snmptest communicates with a network entity using SNMP requests
snmptop display process table on a network entity via SNMP
snmptranslate translate MIB OID names between numeric and textual forms
snmptrap sends an SNMP notification to a manager
snmpusm creates and maintains SNMPv3 users on a network entity
snmpvacm creates and maintains SNMPv3 View-based Access Control entries on a network entity
snmpwalk retrieve a subtree of management values using SNMP GETNEXT requests
snntp transmit netnews articles to a remote NNTP server
snooper a utility for capturing data flowing between serial devices
snooze run a command at a particular time
snort2dlf convert Snort logs to firewall DLF
snow2opml snownews OPML subsription file import/export utility
snowdrop text watermarking and watermark recovery
snowflake manual page for snowflake - 0.01A
snowflake-client WebRTC pluggable transport client for Tor
snowflake-proxy WebRTC pluggable transport proxy for Tor
snownews console RSS newsreader
snowsync snownews subscription list syncing utility
snp-sites finds SNP sites from a multi FASTA alignment file
snp2hgvs extract HGVS records from Entrez SNP document summaries
snp2mipe Inserts SNP data into MIPE file CAUTION: DOES NOT WORK WITH MIPEv1.0 YET!! based on MIPE version v0.9 arguments: * mipe_file * STDIN: tab-delimited list of data, in the following order: PCR ID, SNP ID, SNP pos, SNP amb, SNP rank, SNP remark
snp2tbl present Entrez SNP document summaries in tabular form
snp_store SnpStore
snp_to_files Generic CTN manual page
snpEff genetic variant annotation and effect prediction toolbox
snpPosOnDesign Adds pos_design to SNP based on MIPE version v1.1 arguments: * mipe_file * STDIN: tab-delimited list of data, in the following order: PCR ID, SNP ID
snpPosOnSource Adds pos_source to SNP based on MIPE version v1.1 arguments: * mipe_file * STDIN: tab-delimited list of data, in the following order: PCR ID, SNP ID
snpSift tool to annotate and manipulate genome variants
sntop top-like console network status tool
sntp standard Simple Network Time Protocol client program
sntrup
sntrup1013
sntrup1013-dec
sntrup1013-enc
sntrup1013-keypair
sntrup1277
sntrup1277-dec
sntrup1277-enc
sntrup1277-keypair
sntrup653
sntrup653-dec
sntrup653-enc
sntrup653-keypair
sntrup761
sntrup761-dec
sntrup761-enc
sntrup761-keypair
sntrup857
sntrup857-dec
sntrup857-enc
sntrup857-keypair
sntrup953
sntrup953-dec
sntrup953-enc
sntrup953-keypair

so

soa query nameserver about domain names and zones
soap Short Oligonucleotide Analysis Package aligner
soapcpp2 the gSOAP Stub and Skeleton Compiler for C and C++
soapdenovo-127mer Short-read assembly method that can build a de novo draft assembly
soapdenovo-31mer Short-read assembly method that can build a de novo draft assembly
soapdenovo-63mer Short-read assembly method that can build a de novo draft assembly
soapdenovo2 Short-read assembly method that can build a de novo draft assembly
soapdenovo2-127mer Short-read assembly method that can build a de novo draft assembly
soapdenovo2-63mer Short-read assembly method that can build a de novo draft assembly
soapsuds Mono's Remoting Proxy Generator
SoapySDRServer provide access to local SoapySDR devices over network
SoapySDRUtil query and change module information of SoapySDR
sobby a dedicated server for collaborative editing
socat Multipurpose relay (SOcket CAT)
socat1 Multipurpose relay (SOcket CAT)
sockaddr list address resolution.
sockdebug Creates a UNIX domain socket prints all received data to STDOUT.
sockdown shutdown(2) a socket netpipes 4.2
socket create a TCP or a UNIX domain socket and connect to stdin/out
socket-activate open sockets and exec a systemd-style socket-activated service
socket2socket useful tiny application to connect two sockets
socket_wrapper A library passing all socket communications through unix sockets.
sockperf
socks4test attempt to use SOCKS 4 to relay to a DSBL-complaint host
socks5test attempt to use SOCKS 5 to relay to a DSBL-complaint host
socks_clients
socksify runtime socksification of selected programs
sockstat list open sockets
socnetv Visualize and analyze social networks
sodipodi a vector based drawing program.
sodipodi-bonobo a vector based drawing program.
soelim recursively interpolate source requests in roff or other text files
sofa SOFA GUI
soft A self-hostable Git server for the command line
softbeep Software Bell for Linux
softhsm support tool for libsofthsm
softhsm-keyconv converting between BIND and PKCS#8 key file formats
softhsm2-dump-file SoftHSM object file dump
softhsm2-keyconv converting from BIND to PKCS#8 key file format
softhsm2-migrate SoftHSM v1 migration tool
softhsm2-util support tool for libsofthsm2
software-center manage software
software-properties-gtk Software Sources List editor
software-properties-kde Software Sources List editor
software-properties-qt Software Sources List editor
sogrep Find shared library links in an Arch Linux repository
soju IRC bouncer
sojuctl Manage a running instance of the soju IRC bouncer
sol a GNOME collection of popular solitaire games
solaar wireless Logitech device manager
solaar-cli wireless Logitech device manager
solarpowerlog queries data from a photovoltaic inverter
solarwinds mesmerizing particle effects saver.
soldumper Gnash Local Shared Object (LSO) File Dumper
solfege GPL'ed ear training software
solid_tide Compute solid tide displacement for the specified coordinates
solidDisplacementFoam part of OpenFOAM (The Open Source CFD Toolbox).
solidEquilibriumDisplacementFoam part of OpenFOAM (The Open Source CFD Toolbox).
sollya tool environment for safe floating-point code development -- command-line interface
solo command line interface for SoloKeys Solo 1
solo1 command line interface for SoloKeys Solo 1
solterm An IPMI Serial over LAN program
solv example package manager based on libsolv
solve-field Main high-level command-line user interface.
solvespace a parametric 3d CAD program
solvespace-cli parametric 2d/3d CAD
somaplayer the default player for soma
somaplayer_configure the somaplayer configure script
somaplayer_controller the remote controller of somaplayer
some_modes generate common Modelines for Xorg and fbset
somnec Compute Sommerfield-Norton Ground Grids
sonar display a sonar scope
sonata GTK+ client for the Music Player Daemon
songrec An open-source Shazam client for Linux, written in Rust.
songrec-audio-file-to-fingerprint Generate a Shazam fingerprint from a sound file, and print it to the standard output.
songrec-audio-file-to-recognized-song Generate a Shazam fingerprint from a sound file, perform song recognition towards Shazam's servers and print obtained information to the standard output.
songrec-fingerprint-to-recognized-song Take a data-URI Shazam fingerprint, perform song recognition towards Shazam's servers and print obtained information to the standard output.
songrec-gui The default action. Display a GUI.
songrec-gui-norecording Launch the GUI, but don't recognize audio through the microphone as soon as it is launched (rather than expecting the user to click on a button).
songrec-listen Run as a command-line program listening the microphone and printing recognized songs to stdout, exposing current song info via MPRIS
songrec-microphone-to-recognized-song Recognize a currently playing song using the microphone and print obtained information to the standard output
songrec-recognize Recognize one song from a sound file or microphone and print its info.
songwrite A tablature editor
songwrite3 A tablature and music editor
sonic Speech speed manipulator
sonic-pi The Live Coding Synth for Everyone
sonic-visualiser viewing and analysing the contents of music audio files
sonicDyMFoam part of OpenFOAM (The Open Source CFD Toolbox).
sonicFoam part of OpenFOAM (The Open Source CFD Toolbox).
sonicLiquidFoam part of OpenFOAM (The Open Source CFD Toolbox).
sonicmail No manpage for this program, utility or function.
sonivoxrender Render MIDI song files into raw PCM audio
sooperlooper looping sampler
sopel A highly customizable Internet Relay Chat bot
soplex solve linear programming problems
sopv Verify OpenPGP signatures
sopv-gpgv Stateless OpenPGP Signature Verification backed by gpgv
sopv-inline-verify Verify OpenPGP signed message
sopv-verify Verify detached OpenPGP signatures on a message
sopv-version Get sopv version, build, and compatibility information
soqt-config Display SoQt Library Configuration
sor No manpage for this program, utility or function.
sord_validate validate RDF data
sordi load and rewrite RDF data
Sort This line parsed for whatis database.
sort sort lines of text files
sort-bed manual page for sort-bed 2.4.41+dfsg
sort-by-length sort text in increasing order of line length
sort-dctrl sort Debian control files
sort-pictures sort pictures according to exif date
sort-table sort a tab-delimited table
sort-uniq-count print line frequencies
sort-uniq-count-rank print line frequencies
sortbyquote sort C/C++ code by quoted regions
sorter Sort files in an image into categories based on file type
sorterr re-sort .err file by various criteria
sortgrcd Postprocess of the output of spaln with -O12 option, Version 2
sortm sort messages
sortmail classify incoming mail
sortman sort manual-page path names
sortmerna tool for filtering, mapping and OTU-picking NGS reads
sortPolishes utilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length. mergePolishes - merge alignments from multiple files sortPolishes - sort alignments by cDNA or genomic sequence index or sequence name convertToExtent - Convert from sim4db format to a single-line tab-delimited format fixPolishesIID - Updates a sim4db file to use the sequence index of a specific fasta file. Can also be used to extract a subset of the alignments from the sim4db file. depthOfPolishes - Outputs a tab-delimited histogram of the depth of polishes at various window sizes. headPolishes - print the first N alignments in a file, similar to head(1) pickBestPolish - report only the 'best' alignment for each cDNA pickUniquePolish - reports alignments where there is a clear single best alignment for each cDNA. plotCoverageVsIdentity - Generates (1) a histogram of the percent identity, (2) a histogram of the percent coverage, and (3) a list of percent identity and coverage (for use in a scatter plot). uniqPolishes - Filters out all alignments for cDNA with multiple alignments (-uniq) or with a single alignment (-dupl). Similar to uniq(1) realignPolishes - recompute the alignments listed in a sim4db file. reportAlignmentDifferences - generates a histogram of the types of errors in a set of alignments Unsupported and Deprecated comparePolishes - Correlate alignments in two files. convertToAtac - Converts from sim4db format to ATAC format. detectChimera - Examines alignments for sequences that might be chimeric. mappedCoverage - Reports the amount of the query sequence (EST, cDNA) that is covered by alignments. parseSNP - Analyzes alignments for SNPs. removeDuplicate - searches the input for duplicate alignments. vennPolishes - Generates a Venn diagram for multiple sim4db files. Used internally by ESTMapper cleanPolishes summarizePolishes
sortshp sort a Shape data set
sorttrans-cli sorts a ledger file in chronological order
sos A unified tool for collecting system logs and other debug information
sos-clean Obfuscate sensitive data from one or more sos reports
sos-collect Collect sos reports from multiple (cluster) nodes
sos-collector Collect sos reports from multiple (cluster) nodes
sos-help get detailed help information on sos commands and components
sos-mask Obfuscate sensitive data from one or more sos reports
sos-report Collect and package diagnostic and support data
sos-upload Upload files like previously generated sos reports or logs to a policy specific location
sosi2osm SOSI to OSM converter
sosreport Collect and package diagnostic and support data
sotruss trace shared library calls through PLT
sound-gambit Audio File Peak Limiter
sound-juicer GNOME-desktop CD ripper and player using GStreamer
sound-monitor_applet Sound Monitor applet for the GNOME panel.
sound-properties capplet to set the system sounds.
sound-recorder a direct-to-disk recorder wich uses a soundcard to record.
soundconverter convert sound files to other formats
soundex Relational Database Management System
soundgrab interactively select and save sections of an audio file
soundinfo Describes parts of the Linux Sound system support
soundstretch audio processing utility
soundtracker a tracker for gnome that supports .xm files
soundwrapper Wrapper for tucnak to provide access to PC speaker
soup-config No manpage for this program, utility or function.
soup-httpd No manpage for this program, utility or function.
soup-ssl-proxy No manpage for this program, utility or function.
soup-wsdl No manpage for this program, utility or function.
source index of FreeBSD shell built-in commands
source-extractor extract a source catalogue from an astronomical FITS image
source-highlight convert source code to syntax highlighted document
source-highlight-settings utility that can be used to write a configuration file for GNU Source-highlight (and its library)
sourceforge a fast unix command line interface to WWW services
sourceforge-config Reconfigure Sourceforge
sourcefuncsize statistical analysis of code
sourcekit-lsp
sourmash sourmash Documentation sourmash is a command-line tool and Python/Rust library for metagenome analysis and genome comparison using k-mers. It supports the compositional analysis of metagenomes, rapid search of large sequence databases, and flexible taxonomic profiling with both NCBI and GTDB taxonomies (see our prepared databases for more information). sourmash works well with sequences 30kb or larger, including bacterial and viral genomes. You might try sourmash if you want to - New! The sourmash project also supports querying all 1 million publicly available metagenomes in the Sequence Read Archive. Give it a try! Our vision: sourmash strives to support biologists in analyzing modern sequencing data at high resolution and with full context, including all public reference genomes and metagenomes.
sow command line interface for the Hoe gem creation helper library
sox Sound eXchange_ng, another Swiss Army knife of audio manipulation
sox_ng Sound eXchange_ng, another Swiss Army knife of audio manipulation
soxexam SoX Examples (CHEAT SHEET)
soxi Sound eXchange Information, display sound file metadata
soxi_ng Sound eXchange Information, display sound file metadata
soya_editor small 3D editor for soya
sozip Generate a seek-optimized (SOZip) file. Added in version 3.7.

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