1 User commands

re

• re programm to conver russian texts between different encodings
• re-PCR Find sequence tagged sites (STS) in DNA sequences
• re2c generate fast lexical analyzers for C/C++
• re2d generate fast lexical analyzers for D
• re2go generate fast lexical analyzers for Go
• re2hs generate fast lexical analyzers for Haskell
• re2java generate fast lexical analyzers for Java
• re2js generate fast lexical analyzers for JavaScript
• re2ocaml generate fast lexical analyzers for OCaml
• re2py generate fast lexical analyzers for Python
• re2rust generate fast lexical analyzers for Rust
• re2swift generate fast lexical analyzers for Swift
• re2v generate fast lexical analyzers for V
• re2zig generate fast lexical analyzers for Zig
• reactingFoam part of OpenFOAM (The Open Source CFD Toolbox).
• reactingHeterogenousParcelFoam part of OpenFOAM (The Open Source CFD Toolbox).
• reactingMultiphaseEulerFoam part of OpenFOAM (The Open Source CFD Toolbox).
• reactingParcelFilmFoam is the part of OpenFOAM - a free, open source CFD software.
• reactingParcelFoam part of OpenFOAM (The Open Source CFD Toolbox).
• reactingTwoPhaseEulerFoam part of OpenFOAM (The Open Source CFD Toolbox).
• ReactiveNav3D-Demo GUI demo of robot reactive navigation in 3D
• ReactiveNavigationDemo GUI demo of robot reactive navigation
• read index of FreeBSD shell built-in commands
• read-expenses Export Palm Expense application data in a text format.
• read-ical Exports the DatebookDB and/or ToDo applications to ical format.
• read-notepad List the record information found in the Palm Notepad
• read-palmpix Convert all pictures in the files given or found on a Palm handheld.
• read-screenshot Read screenshots from Palm (ScreenShotDB).
• read-todos Syncronize your Palm ToDo application's database with your desktop machine.
• read-veo Synchronize your Veo Traveler databases
• read_data_file_ccrs read_data_file_ccrs
• read_data_file_dpaf read_data_file_dpaf
• read_datamatrix datamatrix barcode reader
• read_sarleader_dpaf Read DPAF SAR leader file
• read_zbar Command line utility for reading barcodes and QR-codes
• readbin ATLC's binary file information provider
• readbootlog show contents of the boot log, stripping away control characters
• readbuffer read input from devices which don't like constant stopping and starting
• readcd read or write data Compact Discs or related madia
• readdvd is creating an image of your source dvd media or medias even if it has / they have corrupted blocks
• readelf display information about ELF files
• readertest A tool to check a reader configuration
• readfilecount read a specified number of bytes from input
• readinfo read fields from a relational
• readinfo_pp pretty print a readinfo data file
• readlink print resolved symbolic links or canonical file names
• readms Read one or more MeasurementSets
• readmsg No manpage for this program, utility or function.
• readmsg.mailutils print messages.
• readmult a multitrack wrapper for cdda2wav
• readnsstate interpret the contents of cn=replica's nsState value readnsstate /etc/dirsrv/slapd-INSTANCE/dse.ldif
• readom read or write data Compact Discs
• readonly index of FreeBSD shell built-in commands
• readpe displays information about PE files
• readprofile read kernel profiling information
• readpst convert PST (MS Outlook Personal Folders) files to mbox and other formats
• readpstlog convert a readpst logfile to text format
• readPYBase fcitx Pinyin related tools
• readPYMB fcitx Pinyin related tools
• readsb Mode-S aircraft data processor for various receiver hardware.
• readseq Reads and writes nucleic/protein sequences in various formats
• readstat read and write data set files from SAS, SPSS, and Stata
• readtags Find tag file entries matching specified names
• readucks Nanopore read de-multiplexer (read demux -> readux -> readucks, innit)
• realcsh.c A shell for running C code
• realcxxsh.cc A shell for running C++ code
• realignPolishes utilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length. mergePolishes - merge alignments from multiple files sortPolishes - sort alignments by cDNA or genomic sequence index or sequence name convertToExtent - Convert from sim4db format to a single-line tab-delimited format fixPolishesIID - Updates a sim4db file to use the sequence index of a specific fasta file. Can also be used to extract a subset of the alignments from the sim4db file. depthOfPolishes - Outputs a tab-delimited histogram of the depth of polishes at various window sizes. headPolishes - print the first N alignments in a file, similar to head(1) pickBestPolish - report only the 'best' alignment for each cDNA pickUniquePolish - reports alignments where there is a clear single best alignment for each cDNA. plotCoverageVsIdentity - Generates (1) a histogram of the percent identity, (2) a histogram of the percent coverage, and (3) a list of percent identity and coverage (for use in a scatter plot). uniqPolishes - Filters out all alignments for cDNA with multiple alignments (-uniq) or with a single alignment (-dupl). Similar to uniq(1) realignPolishes - recompute the alignments listed in a sim4db file. reportAlignmentDifferences - generates a histogram of the types of errors in a set of alignments Unsupported and Deprecated comparePolishes - Correlate alignments in two files. convertToAtac - Converts from sim4db format to ATAC format. detectChimera - Examines alignments for sequences that might be chimeric. mappedCoverage - Reports the amount of the query sequence (EST, cDNA) that is covered by alignments. parseSNP - Analyzes alignments for SNPs. removeDuplicate - searches the input for duplicate alignments. vennPolishes - Generates a Venn diagram for multiple sim4db files. Used internally by ESTMapper cleanPolishes summarizePolishes
• realpath print the resolved path
• RealTimeSync a folder comparison and synchronization tool (Batch)
• realtimesync a folder comparison and synchronization tool (Batch)
• realvncconnect tell a VNC server to connect to a viewer
• realvncpasswd creating and changing password files to be used with VNC
• realvncpasswd.real creating and changing password files to be used with VNC
• reapr universal tool for genome assembly evaluation
• reapr-break make broken assembly via REAPR
• reapr-facheck checks IDs in fasta file
• reapr-gapresize calculates gap sizes based on read mapping
• reapr-perfectfrombam generate perfect mapping plots from a bam file
• reapr-perfectmap make perfect uniquely mapping plot files
• reapr-pipeline run the REAPR pipeline
• reapr-plots makes Artemis plot files for a given contig
• reapr-preprocess preprocess files for REAPR run
• reapr-score calculate scores and assembly errors
• reapr-seqrename renames all sequences in a BAM file
• reapr-smaltmap map read pairs using SMALT
• reapr-stats generate REAPR stats from a BAM file
• reapr-summary make REAPR summary stats file
• rearj Converts other archive formats to .arj files
• rearrange.pl
• reaver WPS Cracker
• rebar Sophisticated build-tool for Erlang projects that follows OTP principles
• rebar3 tool for working with Erlang projects
• rebase-file-index relocates file index OID pointers from one superpool to another
• rebase-file-pool relocates a file pool's internal OID pointers from one superpool to another
• RebaseTensorImage part of ANTS registration suite
• rebind modify the binding of global variables in an ELF object file
• rebuild-pysnmp-mibs Rebuilds the mib modules for pysnmp from the original mib definitions.
• rebuildctl Manage and query a rebuilderd(1)
• rebuildd rebuild daemon
• rebuildd-job rebuildd job database management
• rebuilderd Independent verification of binary packages (daemon)
• rebuilderd-worker Run rebuilds for rebuilderd
• rec Sound eXchange_ng, another Swiss Army knife of audio manipulation
• rec2bin converts biosignal data into a header file in ASCII format, and a binary file for every channel.
• rec2csv rec to csv converter
• rec_control Command line tool to control a running Recursor
• rec_ng Sound eXchange_ng, another Swiss Army knife of audio manipulation
• recdel remove records from a recfile
• receive receive files from the sendfile spool
• receptor Main controller daemon
• receptor-python-worker Receptor worker helper
• receptorctl Receptor daemon client
• recfix check a recfile for errors
• recfmt apply a template to records
• recinf print information about a recfile
• recins insert records in a recfile
• recite english text speech synthesizer
• reclass command-line interface
• recode converts files between character sets
• recode-sr-latin convert Serbian text from Cyrillic to Latin script
• recoll user interface for the Recoll full text search system
• recollindex indexing command for the Recoll full text search system
• recollq command line / standard output Recoll query command.
• recon Check if LAM can be started.
• recon-cli Allow the use of recon-ng from the command line
• recon-ng Web Reconnaissance framework
• recon-rpc RPC interface for recon-ng
• recon-web web-based user interface for Recon-ng.
• reconcile This program outputs the reconciliation that minimizes the number of duplications
• reconstructPar part of OpenFOAM (The Open Source CFD Toolbox).
• reconstructParMesh part of OpenFOAM (The Open Source CFD Toolbox).
• record records *.wav files
• recordheap record the traced heap activity of a Modula-3 program
• recordio records the input and output of a program.
• recordmydesktop record desktop sessions to an Ogg Theora video file with Vorbis audio
• recordsadmin No manpage for this program, utility or function.
• recountdiff recompute patch counts and offsets
• recover recover a deleted file
• recoverdisk recover data from disk-like devices.
• recoverdm recover files on disks with damaged sectors
• recoverjpeg recover jpeg pictures from a filesystem image
• recovermov recover movies from a filesystem image
• recsel print records from a recfile
• recset manipulate fields in a recfile
• recursdir secure remote tcp login using strong stream cipher encryption and diffie-hellman key exchanges. forward-socket - arbitrary tcp socket forwarding over a secure/encrypted channel. copydir, mirrordir - copy, mirror directory trees via a minimal set of changes, locally or over FTP, or over a secure tcp connection. recursdir - recurse through local or remote directories to command/find files or create tar files.
• recursive_lower recursively lowercase all filenames
• recwav Record an audio file from a Voicetronix hardware port
• Recycler GNUstep Workspace Manager
• red line-oriented text editor
• redcarpet Markdown prosessing like butterflies and popcorn
• redcloth Ruby Textile formatter
• redet regular expression development and execution tool
• rediff fix offsets and counts of a hand-edited diff
• redir redirect TCP connections
• Redirect xerces-c sample program
• redis-benchmark Benechmark a Redis instance
• redis-check-aof Check integrity of a Redis .AOF file
• redis-check-rdb Check integrity of Redis dumped database file
• redis-cli Command-line client to redis-server
• redis-sentinel Persistent key-value database (cluster mode)
• redis-server Persistent key-value database
• redistributePar part of OpenFOAM (The Open Source CFD Toolbox).
• redland-config script to get information about the installed version of Redland
• redland-db-upgrade upgrade older Redland databases to 0.9.12 format
• rednotebook daily journal with calendar, templates and keyword searching
• redo rebuild target files when source files have changed
• redo-always mark the current target as always needing to be rebuilt
• redo-dot print redo dependency graph for the current directory
• redo-ifchange rebuild target files when source files have changed
• redo-ifcreate rebuild the current target if source files are created
• redo-log display log messages from previous builds
• redo-ood print the list of out-of-date redo targets
• redo-sources print the list of all known redo sources
• redo-stamp detect if the current target has meaningfully changed
• redo-targets print the list of all known redo targets
• redo-whichdo show redo's search path for a .do file
• redraw_maps visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
• redshift set color temperature of display according to time of day
• redshift-gtk set color temperature of display according to time of day
• reduce-font reduce a font to a set of glyphs
• reductions
• redund
• ree easy editor
• reentry manage your reentry python entry point cache
• ref Display a C function header
• ref-elvis Display a C function header
• ref2pmid match PubMed citations in Reference Index XML
• refblas3-test testing programs for blas
• refdb-backup RefDB tool: back up RefDB references, notes and styles
• refdb-bug RefDB tool: writes text file containing summary of RefDB's configuration
• refdb-ms a console-based style generator for RefDB
• refdb-restore RefDB tool: restore RefDB references, notes and styles
• refdb-sruserver Simple SRU server for RefDB databases
• refdb_dos2unix RefDB tool: convert file formats from DOS to Unix
• refdb_latex2utf8txt converts bibtex bibliographic data to UTF-8 plain text
• refdba the administration client of RefDB
• refdbc the reference and note management client of RefDB
• refdbctl refdbd startup script
• refdbd the application server of RefDB
• refdbib the bibliography client of RefDB
• refdbjade transform SGML and XML documents containing RefDB bibliographies
• refdbnd creates a skeleton document and a Makefile for RefDB
• refdbsru CGI script providing SRU access to RefDB databases
• refdbxml transform XML documents containing RefDB bibliographies
• refdbxp converts short and full citation formats in SGML and XML documents containing RefDB citations.
• refdes_renum gEDA/gaf refdes renumbering utility
• refeature Read a file representing a set of features, optionally
• refer process bibliographic references for groff
• referenced No manpage for this program, utility or function.
• referer2dlf convert referer web server log file to www DLF
• refile file message in other folders
• refine Create abstract correction profile given table of absolute CIE correction values.
• refine_wavelength refine_wavelength
• refineHexMesh part of OpenFOAM (The Open Source CFD Toolbox).
• refinementLevel part of OpenFOAM (The Open Source CFD Toolbox).
• refineMesh part of OpenFOAM (The Open Source CFD Toolbox).
• refineWallLayer part of OpenFOAM (The Open Source CFD Toolbox).
• reflector retrieve and filter the latest Pacman mirrorlist
• reflex Run a command when files change
• reform-boot-config choose rootfs to boot from
• reform-chat chat on #mnt-reform
• reform-check check your setup
• reform-compstat system statistics for waybar
• reform-config select keyboard and timezone
• reform-display-config select single/dual display
• reform-emmc-bootstrap set up /boot on emmc for / on nvme
• reform-flash-rescue flash rescue image to eMMC
• reform-flash-uboot download and flash u-boot
• reform-handbook show Reform Handbook
• reform-help help with MNT Reform
• reform-hw-setup perform hardware tweaks
• reform-mcu-tool manage microcontrollers
• reform-migrate copy rootfs to device
• reform-pavucontrol kill and restart pavucontrol
• reform-setup-encrypted-disk setup encrypted disk
• reform-setup-encrypted-nvme use setup-encrypted-disk
• reform-standby suspend/wakeup tweaks
• reformail E-mail reformatting tool
• reformat.sh Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64
• reformat_output reformats output for easier reading as tsv
• reformime MIME E-mail reformatting tool
• refseq-nm-cds download NCBI RefSeq mRNAs and summarize coding regions
• refurb A tool for refurbishing and modernizing Python codebases
• regapi No manpage for this program, utility or function.
• regcomp register a component with OpenOffice.org
• regconcat Combine several Regina data files
• regconvert Convert between different Regina file formats
• regdiff Diff program for Windows registry files
• regedit Wine registry editor
• regedit-development Wine registry editor
• regedit-stable Wine registry editor
• regenerator functional JavaScript transformator
• regexxer visual regular expression search and replace
• regfiledump Dump the contents of a Regina data file
• regfiletype Identify the formats of Regina data files
• regfinfo determines information about a Windows NT Registry File (REGF)
• regina The Regina Rexx Interpreter
• regina-config Developer Configuration for The Regina Rexx interpreter
• regina-engine-config Get compiler and linker flags to build software against Regina
• regina-gui Regina's graphical user interface
• regina-helper Helper utility for working with a Regina installation
• regina-kde Obsolete command for Regina's graphical user interface
• regina-python Regina's command-line Python interface
• register-common-lisp-implementation registers a Common Lisp Implementation
• register-common-lisp-source registers a Common Lisp source package
• register-plist smart diff and registration of packing-lists
• register-python-argcomplete register-python-argcomplete - argcomplete utility script
• register-python-argcomplete3 register-python-argcomplete - argcomplete utility script
• register-ukui-session-service Register services for UKUI session management
• register-ukui-system-service UKUI system service registration
• registerRTSPStream various utilities to test receiving and streaming of RTP streams
• registrar GroupKit registration daemon
• regjsparser Parser of Javascript regular expressions
• reglookup Windows NT+ registry reader/lookup tool
• reglookup-recover Windows NT+ registry deleted data recovery tool
• reglookup-timeline Windows NT+ registry MTIME timeline generator
• regolith-powerd Power Settings Daemon for Regolith Wayland Session
• regorge measures I/O performance and/or generates I/O load
• regpatch Applies registry patches to registry files
• regripper forensic analysis of Registry hives
• regshell Windows registry file browser using readline
• regsvr32 Wine DLL Registration Server
• regsvr32-development Wine DLL Registration Server
• regsvr32-stable Wine DLL Registration Server
• regtest Global Consciousness Project REG Software
• regtree Text-mode registry viewer
• regular No manpage for this program, utility or function.
• rehash index of FreeBSD shell built-in commands
• RehearseCode run through Mentor CodeView source file annotations.
• reify a small utility that reifies logic programs
• reindex a collection of tools for xbase database files
• reindexdb reindex a PostgreSQL database
• reinteract worksheet-based graphical Python shell
• rekal memory forensics framework
• rekall memory forensics framework
• rekey Binary key regeneration for kaya web applications
• rekonq A lightweight Web Browser for KDE based on WebKit
• rekor-cli Rekor command line interface tool
• rel-cdcontrol No manpage for this program, utility or function.
• rel2gpx create GPX-Tracks from OSM relation
• relational Implementation of Relational algebra.
• relational-cli Implementation of Relational algebra.
• relatorio-render manual page for usage: relatorio-render [-h] -i INPUT [-o OUTPUT] [-d DATA]
• relaytest attempt to use SMTP to relay to a DSBL-compliant host
• relaytool Generate a file that can be used instead of linking directly against a library
• release Deprecated program
• releaseforge alternative to the SourceForge File Release System (FRS)
• reload_armor Slash spamarmors
• reload_gtk_apps small utility for sending signal to reload theme in Gtk+ programs.
• reloc65 relocator for o65 object files
• relpath-2.6.4 The Free Pascal file deletion tool.
• relpath-3.0.0 The Free Pascal file deletion tool.
• relpath-3.0.4 The Free Pascal file deletion tool.
• relpath-3.2.0 The Free Pascal file deletion tool.
• relpath-3.2.2 The Free Pascal file deletion tool.
• reLyX
• rem Invoke Remind with a default filename
• rem2html Convert the output of "remind -pp" or "remind -ppp" to HTML
• rem2ps draw a PostScript calendar from Remind output
• remadmin generic graphical user interface
• remake GNU make utility to maintain groups of programs
• remaster-compose iso composition tool of remaster-iso
• remaster-extract iso extraction tool of remaster-iso
• remaster-squashfs-editor iso filesystem.squashfs editor tool of remaster-iso
• remctl Remote execution tool
• remind a sophisticated reminder service
• reminders Exports your Palm Datebook database into a 'remind' data file format
• remmina
• remmina-applet GNOME applet for Remmina.
• remmina-file-wrapper
• remmina-gnome Script file to start common GNOME Shell interfaces
• remote-logon-config-agent Retrieve JSON based remote logon information
• remote-tty connect to a ttysrv serial console instance
• remote-viewer a simple remote desktop client
• RemoteDesk Remote Windows access tool for GNUstep
• remotetrx The SvxLink remote transceiver application
• remotezip Access zip file content hosted remotely without downloading the full file
• remount display the list of volumes mounted by vold, and control vold.
• remove-duplicates remove duplicates of the same file in the current directory
• remove_brackets remove delimiters from text
• remove_long_seqs visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
• remove_short_seqs visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
• remove_tradis_tags bio-tradis: remove transposon sequence and quality tags from the read strings
• removeDup toolkit for processing next-gen sequencing data
• removeDuplicate utilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length. mergePolishes - merge alignments from multiple files sortPolishes - sort alignments by cDNA or genomic sequence index or sequence name convertToExtent - Convert from sim4db format to a single-line tab-delimited format fixPolishesIID - Updates a sim4db file to use the sequence index of a specific fasta file. Can also be used to extract a subset of the alignments from the sim4db file. depthOfPolishes - Outputs a tab-delimited histogram of the depth of polishes at various window sizes. headPolishes - print the first N alignments in a file, similar to head(1) pickBestPolish - report only the 'best' alignment for each cDNA pickUniquePolish - reports alignments where there is a clear single best alignment for each cDNA. plotCoverageVsIdentity - Generates (1) a histogram of the percent identity, (2) a histogram of the percent coverage, and (3) a list of percent identity and coverage (for use in a scatter plot). uniqPolishes - Filters out all alignments for cDNA with multiple alignments (-uniq) or with a single alignment (-dupl). Similar to uniq(1) realignPolishes - recompute the alignments listed in a sim4db file. reportAlignmentDifferences - generates a histogram of the types of errors in a set of alignments Unsupported and Deprecated comparePolishes - Correlate alignments in two files. convertToAtac - Converts from sim4db format to ATAC format. detectChimera - Examines alignments for sequences that might be chimeric. mappedCoverage - Reports the amount of the query sequence (EST, cDNA) that is covered by alignments. parseSNP - Analyzes alignments for SNPs. removeDuplicate - searches the input for duplicate alignments. vennPolishes - Generates a Venn diagram for multiple sim4db files. Used internally by ESTMapper cleanPolishes summarizePolishes
• removeFaces part of OpenFOAM (The Open Source CFD Toolbox).
• removePcrFromMipe Removes PCR data from MIPE file based on MIPE version v0.7 arguments: * mipe_file * STDIN: PCR ID
• removeSbeFromMipe Removes SBE data from MIPE file based on MIPE version v0.9 arguments: * mipe_file * STDIN: tab-delimited list of data, in the following order: PCR ID, SNP ID, SBE ID
• removeSnpFromMipe Removes SNP data from MIPE file based on MIPE version v0.9 arguments: * mipe_file * STDIN: tab-delimited list of data, in the following order: PCR ID, SNP ID
• removing-npm Cleaning the Slate
• remrun copy a file to a remote host and execute it
• remsync GNU sharutils
• remuco-amarok A daemon which allows control to Amarok via bluetooth
• remuco-audacious A daemon which allows control to Audacious via bluetooth
• remuco-banshee A daemon which allows control to Banshee via bluetooth
• remuco-clementine A daemon which allows control to Clementine via bluetooth
• remuco-gmusicbrowser A daemon which allows control to Banshee via bluetooth
• remuco-mpd A daemon which allows control to Banshee via bluetooth
• remuco-mplayer A daemon which allows control to Banshee via bluetooth
• remuco-okular A daemon which allows control to Okular via bluetooth
• remuco-quodlibet A daemon which allows control to Banshee via bluetooth
• remuco-report report Remuco client device information
• remuco-tvtime A daemon which allows control to Banshee via bluetooth
• remuco-vlc A daemon which allows control to Banshee via bluetooth
• remuco-xmms2 A daemon which allows control to Banshee via bluetooth
• remunge MUNGE credential benchmark
• remux variety of tools that transform between various MPEG stream formats
• rename rename files
• rename-flac CLI tool to rename FLAC files
• rename.ul rename files
• renamer undocumented LADR4 applications
• renattach rename/delete dangerous email attachments
• render Raster3D molecular graphics package rendering program
• render_expired expires a list of map tiles so that they get re-rendered.
• render_hlg render_hlg
• render_list renders a list of map tiles by sending requests to a rendering daemon.
• render_old renders a list of map tiles by sending requests to a rendering daemon.
• render_speedtest Benchmark tile rendering with renderd.
• rendercheck simple tests of the X Render extension.
• renderd Rendering daemon for rendering OpenStreetMap tiles.
• rendersvg an SVG rendering application
• renice alter priority of running processes
• reniced renice running processes based on regular expressions
• renum Bywater BASIC interpreter/shell
• renumberMesh part of OpenFOAM (The Open Source CFD Toolbox).
• reorder-columns reorder columns of a tab-delimited file
• reordercap Reorder input file by timestamp into output file
• reordertp Reorders incoming packets and reconstitutes the original RTP stream.
• ReorientTensorImage part of ANTS registration suite
• rep Librep Interpreter
• rep-config script to get information about the installed version of LIBREP
• rep-remote provides a protocol for executing all of librep's file operations on that host
• rep-xgettext extract i18n strings from lisp scripts.
• repack-file-index reorganize a FramerD file index
• repack-file-pool reorganize a FramerD file pool
• repair toolkit for processing next-gen sequencing data
• REPcover alignment-based scrubbing pipeline for DNA sequencing reads
• repdoc strip doc-strings from C source.
• repeat index of FreeBSD shell built-in commands
• repeat-match package for sequence alignment of multiple genomes
• repeatmasker-recon finds repeat families from biological sequences
• repeatoire part of mauveAligner package
• repeats2anchors.pl
• repeatviz.pl
• repetier-host program to control 3D printers
• rephrase Specialized passphrase recovery tool for GnuPG
• repl reply to a message
• repl-monitor Directory Server replication monitor
• replace a string-replacement utility
• replaceit A quick, light and effective text replacement tool
• replacekey replace keywords in a FITS header
• replay play back typescripts, using timing information
• replaygain single file Replay Gain editor
• replayheap replay a recorded Modula-3 heap activity
• replcon SELinux file context replacement tool
• replica_exchange Work Queue application for running replica exchange simulations using ProtoMol
• Replication Example of using QuantLib
• replmarks replace triangular markers in a RADIANCE scene description
• repmgr PostgreSQL replication manager
• Repo Example of using QuantLib
• repo repository management tool built on top of git
• repo-abandon repo abandon - manual page for repo abandon
• repo-branch repo branches - manual page for repo branches
• repo-branches repo branches - manual page for repo branches
• repo-checkout repo checkout - manual page for repo checkout
• repo-cherry-pick repo cherry-pick - manual page for repo cherry-pick
• repo-diff repo diff - manual page for repo diff
• repo-diffmanifests repo diffmanifests - manual page for repo diffmanifests
• repo-download repo download - manual page for repo download
• repo-forall repo forall - manual page for repo forall
• repo-gc repo gc - manual page for repo gc
• repo-gitc-delete repo gitc-delete - manual page for repo gitc-delete
• repo-gitc-init repo gitc-init - manual page for repo gitc-init
• repo-graph redirecting to DNF repograph Plugin Output a full package dependency graph in dot format.
• repo-grep repo grep - manual page for repo grep
• repo-help repo help - manual page for repo help
• repo-info repo info - manual page for repo info
• repo-init repo init - manual page for repo init
• repo-list repo list - manual page for repo list
• repo-manifest repo manifest - manual page for repo manifest
• repo-overview repo overview - manual page for repo overview
• repo-prune repo prune - manual page for repo prune
• repo-rebase repo rebase - manual page for repo rebase
• repo-rss generates an RSS feed from one or more Yum repositories
• repo-selfupdate repo selfupdate - manual page for repo selfupdate
• repo-smartsync repo smartsync - manual page for repo smartsync
• repo-stage repo stage - manual page for repo stage
• repo-start repo start - manual page for repo start
• repo-status repo status - manual page for repo status
• repo-sync repo sync - manual page for repo sync
• repo-upload repo upload - manual page for repo upload
• repo-version repo version - manual page for repo version
• repo-wipe repo wipe - manual page for repo wipe
• repo2solv convert repository metadata into a solv file
• repobench generate and/or display reposurgeon benchmarks
• repoclosure redirecting to DNF repoclosure Plugin Display a list of unresolved dependencies for repositories.
• repocutter surgical and filtering operations on Subversion dump files
• repod-file
• repodiff redirecting to DNF repodiff Plugin Display a list of differences between two or more repositories
• repodiffer report differences between repository histories
• repomanage redirecting to DNF repomanage Plugin Manage a repository or a simple directory of rpm packages.
• repomapper update and manipulate contributor maps
• repomdxml2solv convert a repomd.xml file into a solv file
• repopush safely rsync a package repository to another location
• repoquery query information from Yum repositories
• report No manpage for this program, utility or function.
• report-hw dump information on the system's hardware
• report.cgi CGI front-end to xymongen reporting
• report.gui No manpage for this program, utility or function.
• report2.byte OCaml code generator to read/write XML file into/from OCaml structure.
• report2.gui.byte GUI to edit report2.byte XML file.
• reportAlignmentDifferences utilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length. mergePolishes - merge alignments from multiple files sortPolishes - sort alignments by cDNA or genomic sequence index or sequence name convertToExtent - Convert from sim4db format to a single-line tab-delimited format fixPolishesIID - Updates a sim4db file to use the sequence index of a specific fasta file. Can also be used to extract a subset of the alignments from the sim4db file. depthOfPolishes - Outputs a tab-delimited histogram of the depth of polishes at various window sizes. headPolishes - print the first N alignments in a file, similar to head(1) pickBestPolish - report only the 'best' alignment for each cDNA pickUniquePolish - reports alignments where there is a clear single best alignment for each cDNA. plotCoverageVsIdentity - Generates (1) a histogram of the percent identity, (2) a histogram of the percent coverage, and (3) a list of percent identity and coverage (for use in a scatter plot). uniqPolishes - Filters out all alignments for cDNA with multiple alignments (-uniq) or with a single alignment (-dupl). Similar to uniq(1) realignPolishes - recompute the alignments listed in a sim4db file. reportAlignmentDifferences - generates a histogram of the types of errors in a set of alignments Unsupported and Deprecated comparePolishes - Correlate alignments in two files. convertToAtac - Converts from sim4db format to ATAC format. detectChimera - Examines alignments for sequences that might be chimeric. mappedCoverage - Reports the amount of the query sequence (EST, cDNA) that is covered by alignments. parseSNP - Analyzes alignments for SNPs. removeDuplicate - searches the input for duplicate alignments. vennPolishes - Generates a Venn diagram for multiple sim4db files. Used internally by ESTMapper cleanPolishes summarizePolishes
• reportbug reports a bug to a debbugs server
• reportbug-ng An easy to use alternative to reportbug
• reportlog.cgi CGI program to report service availability log
• reportview ask KWeatherService to display a weather report
• repose an Archlinux repository compiler
• reposurgeon surgical operations on repositories
• reposync redirecting to DNF reposync Plugin Synchronize packages of a remote DNF repository to a local directory.
• repotool operate on aany supporteed repository type in a uniform way
• repotrack track a package and its dependencies and download them
• reppu A network rendering program for blender
• REPqv alignment-based scrubbing pipeline for DNA sequencing reads
• reprepro produce, manage and sync a local repository of Debian packages
• repro-env Dependency lockfiles for reproducible build environments
• reproducible-check Reports on the reproducible status of installed packages
• reprof predict protein secondary structure and solvent accessibility
• reprotest Build packages and check them for reproducibility.
• reprounzip tool for reproducing scientific experiments (unpacker)
• reprozip tool for reproducing scientific experiments (packer)
• repsnapper program to operate RepRap 3D printer
• repstopdf convert an EPS file to PDF
• REPtrim alignment-based scrubbing pipeline for DNA sequencing reads
• reptyr Reparent a running program to a new terminal
• requestbackport File a backport request bug
• requestsync helper to file sync requests for Ubuntu
• reroot Compute a (new) root for the tree.
• rerun run programs and restarts them on filesystem changes
• resamp resamp
• resample resample a 16-bit mono or stereo sound file by an arbitrary factor