yara_indexer1
Yara indexer
Usage
yara_indexer [OPTIONS]
<REFERENCE
FILE>
Overview
Yara - Yet Another Read Aligner.
See http://www.seqan.de/projects/yara for more information.
(c) Copyright 2011-2014 by Enrico Siragusa.
(c) Copyright 2013 by NVIDIA Corporation.
Required arguments
REFERENCE_FILEINPUT_FILE-
A reference genome file. Valid filetypes are: .sam[.*], .raw[.*], .gbk[.*], .frn[.*], .fq[.*], .fna[.*], .ffn[.*], .fastq[.*], .fasta[.*], .faa[.*], .fa[.*], .embl[.*], and .bam, where * is any of the following extensions: gz, bz2, and bgzf for transparent (de)compression.
Options
-
-h, --help -
Display the help message.
-
--version -
Display version information.
-
-v, --verbose -
Displays verbose output.
Output Options:
-
-o, --output-prefix OUTPUT_PREFIX -
Specify a filename prefix for the reference genome index. Default: use the filename prefix of the reference genome.
-
-td, --tmp-dir STRING -
Specify a temporary directory where to construct the index. Default: use the output directory.
Releases
5 releases since Debian 9 (Stretch); the text changed 1 time.
--help since Debian 10 (Buster);
--output-prefix since Debian 10 (Buster);
--tmp-dir since Debian 10 (Buster);
--verbose since Debian 10 (Buster);
--version since Debian 10 (Buster);
-h since Debian 10 (Buster);
-o since Debian 10 (Buster);
-td since Debian 10 (Buster);
-v since Debian 10 (Buster).